Calcium in PDB 2uvp: Crystal Structure of Hoba (HP1230)From Helicobacter Pylori

The structure of Crystal Structure of Hoba (HP1230)From Helicobacter Pylori, PDB code: 2uvp was solved by L.Terradot, G.Natrajan, A.C.Thompson, D.R.Hall, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	97.13 / 1.70
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	112.232, 112.232, 61.929, 90.00, 90.00, 120.00
R / Rfree (%)	18 / 21.4

The binding sites of Calcium atom in the Crystal Structure of Hoba (HP1230)From Helicobacter Pylori (pdb code 2uvp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of Hoba (HP1230)From Helicobacter Pylori, PDB code: 2uvp:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Crystal Structure of Hoba (HP1230)From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Hoba (HP1230)From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1181 b:16.4 occ:1.00 OD1 B:ASN176 2.4 15.6 1.0 O B:HOH2231 2.4 18.0 1.0 O B:HOH2227 2.4 15.9 1.0 CG B:ASN176 3.6 14.4 1.0 O B:VAL173 4.0 15.5 1.0 ND2 B:ASN176 4.3 13.5 1.0 CA B:ASN176 4.7 15.6 1.0 CB B:ASN176 4.7 15.3 1.0 O B:HOH2027 4.8 30.8 1.0

Calcium binding site 2 out of 5 in the Crystal Structure of Hoba (HP1230)From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Hoba (HP1230)From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1183 b:25.1 occ:1.00 O B:HOH2197 2.2 29.3 1.0 OE2 B:GLU140 2.4 30.4 1.0 O B:GLU143 2.4 25.1 1.0 C B:GLU143 3.5 25.2 1.0 CD B:GLU140 3.5 27.7 1.0 NH2 B:ARG30 3.7 37.1 1.0 CA B:GLU143 4.1 26.6 1.0 CG B:GLU140 4.2 24.6 1.0 OE1 B:GLU140 4.5 25.3 1.0 CD1 B:LEU147 4.6 23.5 1.0 O B:CYS145 4.6 18.6 1.0 CB B:GLU143 4.7 26.6 1.0 N B:ASP144 4.7 24.0 1.0 O B:HOH2195 4.7 39.6 1.0 CZ B:ARG30 4.9 37.3 1.0 N B:CYS145 4.9 21.4 1.0 O B:LYS142 5.0 23.8 1.0

Calcium binding site 3 out of 5 in the Crystal Structure of Hoba (HP1230)From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Hoba (HP1230)From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1181 b:11.6 occ:0.50 O C:HOH2224 2.5 18.0 1.0 ND2 C:ASN176 2.6 11.4 1.0 O C:HOH2225 2.6 16.7 1.0 CG C:ASN176 3.8 15.1 1.0 O C:HOH2232 4.1 53.3 1.0 O C:VAL173 4.2 14.9 1.0 OD1 C:ASN176 4.4 15.8 1.0 O C:HOH2027 4.7 30.4 1.0 CA C:ASN176 4.9 16.2 1.0 CB C:ASN176 4.9 15.7 1.0 O C:VAL178 5.0 23.3 1.0

Calcium binding site 4 out of 5 in the Crystal Structure of Hoba (HP1230)From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Hoba (HP1230)From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1182 b:15.6 occ:0.50 OE1 D:GLU27 2.4 16.6 1.0 OE1 C:GLU17 2.6 17.1 1.0 O D:HOH2044 2.6 16.4 1.0 CD D:GLU27 3.4 16.9 1.0 CD C:GLU17 3.6 15.6 1.0 OE2 D:GLU27 3.7 16.6 1.0 CG C:GLU17 3.9 13.1 1.0 O D:HOH2043 3.9 14.0 1.0 O C:HOH2033 4.3 32.5 1.0 CG C:ARG13 4.7 16.1 1.0 CG D:GLU27 4.7 16.0 1.0 OE2 C:GLU17 4.8 17.3 1.0

Calcium binding site 5 out of 5 in the Crystal Structure of Hoba (HP1230)From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Hoba (HP1230)From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1184 b:25.0 occ:1.00 O C:HOH2190 2.3 29.0 1.0 O C:HOH2184 2.4 31.4 1.0 OE2 C:GLU140 2.4 28.5 1.0 O C:GLU143 2.4 23.0 1.0 OE2 C:GLU143 2.6 32.2 1.0 CD C:GLU143 3.4 31.5 1.0 C C:GLU143 3.6 23.0 1.0 CD C:GLU140 3.6 26.0 1.0 CG C:GLU143 3.9 26.9 1.0 CA C:GLU143 4.1 23.6 1.0 CG C:GLU140 4.1 22.9 1.0 OE1 C:GLU143 4.2 33.0 1.0 OE1 C:GLU140 4.6 22.9 1.0 CB C:GLU143 4.7 24.4 1.0 O C:CYS145 4.7 18.9 1.0 N C:ASP144 4.7 22.4 1.0 CD1 C:LEU147 4.9 22.8 1.0 N C:CYS145 5.0 21.1 1.0 O C:LYS142 5.0 22.9 1.0

G.Natrajan, D.R.Hall, A.C.Thompson, I.Gutsche, L.Terradot. Structural Similarity Between the Dnaa-Binding Proteins Hoba (HP1230) From Helicobacter Pylori and Diaa From Escherichia Coli. Mol. Microbiol. V. 65 995 2007.
ISSN: ISSN 0950-382X
PubMed: 17683397
DOI: 10.1111/J.1365-2958.2007.05843.X