Calcium in PDB 2vdt: Crystallographic Structure of Levansucrase From Bacillus Subtilis Mutant S164A

All present enzymatic activity of Crystallographic Structure of Levansucrase From Bacillus Subtilis Mutant S164A:
2.4.1.10;

The structure of Crystallographic Structure of Levansucrase From Bacillus Subtilis Mutant S164A, PDB code: 2vdt was solved by M.E.Ortiz-Soto, M.Rivera, E.Rudino-Pinera, C.Olvera, A.Lopez-Munguia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.41 / 3.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.880, 55.800, 124.600, 90.00, 90.00, 90.00
R / Rfree (%)	26.5 / 29.7

The binding sites of Calcium atom in the Crystallographic Structure of Levansucrase From Bacillus Subtilis Mutant S164A (pdb code 2vdt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystallographic Structure of Levansucrase From Bacillus Subtilis Mutant S164A, PDB code: 2vdt:

Calcium binding site 1 out of 1 in the Crystallographic Structure of Levansucrase From Bacillus Subtilis Mutant S164A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystallographic Structure of Levansucrase From Bacillus Subtilis Mutant S164A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1473 b:75.5 occ:1.00 OD1 A:ASP241 2.2 53.8 1.0 OD1 A:ASN310 2.6 39.4 1.0 OE1 A:GLN272 2.6 44.8 1.0 OD1 A:ASP339 2.6 54.5 1.0 OD2 A:ASP339 2.6 60.9 1.0 O A:ASN242 2.7 51.5 1.0 CG A:ASP339 2.9 49.4 1.0 ND2 A:ASN264 3.0 57.0 1.0 CG A:ASP241 3.1 58.9 1.0 O A:LEU308 3.3 54.8 1.0 OD2 A:ASP241 3.4 52.3 1.0 CG A:ASN310 3.6 39.0 1.0 C A:ASN242 3.6 52.5 1.0 N A:ASN242 3.6 53.6 1.0 NE2 A:GLN226 3.7 45.1 1.0 CD A:GLN272 3.7 41.7 1.0 ND2 A:ASN310 4.0 38.5 1.0 CG A:ASN264 4.0 50.5 1.0 CA A:ASN242 4.1 52.5 1.0 NE2 A:GLN272 4.3 40.9 1.0 CB A:ASP241 4.3 55.2 1.0 CB A:ASP339 4.3 46.8 1.0 OE1 A:GLN226 4.4 39.6 1.0 CD A:GLN226 4.4 42.5 1.0 O A:ASN310 4.5 49.2 1.0 C A:ASP241 4.5 54.5 1.0 CB A:ASN264 4.6 47.6 1.0 C A:LEU308 4.6 56.5 1.0 N A:HIS243 4.6 52.2 1.0 N A:ASN310 4.7 43.8 1.0 CA A:ASP241 4.7 54.9 1.0 CB A:ASN242 4.9 53.5 1.0 OD1 A:ASN264 4.9 57.2 1.0 CB A:ASN310 4.9 38.5 1.0 O A:ASP339 4.9 47.5 1.0 CG A:GLN272 5.0 41.8 1.0

M.E.Ortiz-Soto, M.Rivera, E.Rudino-Pinera, C.Olvera, A.Lopez-Munguia. Selected Mutations in Bacillus Subtilis Levansucrase Semi-Conserved Regions Affecting Its Biochemical Properties Protein Eng.Des.Sel. V. 21 589 2008.
ISSN: ISSN 1741-0126
PubMed: 18596022
DOI: 10.1093/PROTEIN/GZN036