Calcium in PDB 2vmb: The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae

The structure of The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae, PDB code: 2vmb was solved by J.Abendroth, K.V.Korotkov, D.D.Mitchell, A.Kreger, W.G.J.Hol, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.08 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.197, 53.832, 89.070, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 25.1

The binding sites of Calcium atom in the The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae (pdb code 2vmb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae, PDB code: 2vmb:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1177 b:27.7 occ:1.00 OE2 B:GLU97 2.3 33.3 1.0 OE2 A:GLU151 2.3 31.3 1.0 O A:HOH2096 2.4 32.9 1.0 OD2 A:ASP155 2.4 33.0 1.0 O B:HOH2031 2.5 25.9 1.0 O B:HOH2025 2.5 32.5 1.0 OD1 A:ASP155 2.7 33.3 1.0 CG A:ASP155 2.9 33.1 1.0 CD B:GLU97 3.3 33.6 1.0 CD A:GLU151 3.4 35.2 1.0 CG B:GLU97 3.5 34.1 1.0 CG A:GLU151 3.9 33.9 1.0 O B:HOH2026 4.2 35.4 1.0 O A:HOH2099 4.2 40.7 1.0 O B:HOH2032 4.3 56.7 1.0 OE1 A:GLU151 4.4 37.0 1.0 NH1 A:ARG73 4.4 30.9 1.0 CB A:ASP155 4.4 32.1 1.0 OE1 B:GLU97 4.4 35.4 1.0 NH2 A:ARG73 4.5 31.7 1.0 O B:GLN95 4.8 33.3 1.0 O A:GLU151 4.8 32.1 1.0 O A:HOH2097 4.9 42.8 1.0 CZ A:ARG73 4.9 32.5 1.0

Calcium binding site 2 out of 2 in the The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1177 b:26.5 occ:1.00 OE2 B:GLU151 2.3 33.1 1.0 OE2 A:GLU97 2.3 32.1 1.0 O A:HOH2040 2.4 22.8 1.0 OD2 B:ASP155 2.5 31.8 1.0 O A:HOH2037 2.6 31.7 1.0 O B:HOH2087 2.7 30.6 1.0 OD1 B:ASP155 2.7 34.4 1.0 CG B:ASP155 2.9 32.7 1.0 CD A:GLU97 3.4 33.4 1.0 CD B:GLU151 3.4 34.3 1.0 CG A:GLU97 3.7 33.4 1.0 CG B:GLU151 3.9 33.3 1.0 O A:HOH2041 4.2 41.6 1.0 O B:HOH2089 4.3 31.6 1.0 O A:HOH2035 4.3 32.1 1.0 CB B:ASP155 4.4 32.5 1.0 OE1 B:GLU151 4.5 38.2 1.0 NH1 B:ARG73 4.5 33.5 1.0 OE1 A:GLU97 4.5 35.4 1.0 NH2 B:ARG73 4.6 29.2 1.0 O A:GLN95 4.8 32.5 1.0 O B:GLU151 4.8 29.9 1.0

J.Abendroth, D.D.Mitchell, K.V.Korotkov, T.L.Johnson, A.Kreger, M.Sandkvist, W.G.Hol. The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf From the Type 2 Secretion System of Vibrio Cholerae. J.Struct.Biol. V. 166 303 2009.
ISSN: ISSN 1047-8477
PubMed: 19324092
DOI: 10.1016/J.JSB.2009.03.009