Calcium in PDB 2vmi: The Structure of Seleno-Methionine Labelled CBM51 From Clostridium Perfringens GH95

The structure of The Structure of Seleno-Methionine Labelled CBM51 From Clostridium Perfringens GH95, PDB code: 2vmi was solved by K.Gregg, R.Finn, D.W.Abbott, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.37 / 1.70
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	76.721, 76.721, 51.771, 90.00, 90.00, 120.00
R / Rfree (%)	15 / 17.8

The binding sites of Calcium atom in the The Structure of Seleno-Methionine Labelled CBM51 From Clostridium Perfringens GH95 (pdb code 2vmi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Structure of Seleno-Methionine Labelled CBM51 From Clostridium Perfringens GH95, PDB code: 2vmi:

Calcium binding site 1 out of 1 in the The Structure of Seleno-Methionine Labelled CBM51 From Clostridium Perfringens GH95


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of Seleno-Methionine Labelled CBM51 From Clostridium Perfringens GH95 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca3050 b:7.5 occ:1.00 O A:ASP1032 2.4 8.5 1.0 OD1 A:ASP1035 2.4 7.0 1.0 O A:SER1036 2.4 7.9 1.0 O A:SER989 2.4 6.5 1.0 O A:HOH2124 2.5 5.8 1.0 OD2 A:ASP1040 2.5 8.4 1.0 OG A:SER989 2.5 6.9 1.0 OD1 A:ASP1040 2.6 7.5 1.0 CG A:ASP1040 2.9 6.8 1.0 C A:ASP1032 3.3 8.4 1.0 C A:SER989 3.4 6.0 1.0 CG A:ASP1035 3.5 11.7 1.0 CB A:SER989 3.6 7.5 1.0 C A:SER1036 3.7 9.4 1.0 N A:SER989 3.7 6.5 1.0 CA A:SER989 3.8 6.5 1.0 OD2 A:ASP1035 3.9 14.0 1.0 CA A:ASP1032 4.0 8.4 1.0 N A:SER1036 4.1 13.6 1.0 N A:GLY1033 4.2 10.2 1.0 O A:HOH2122 4.3 12.2 1.0 CB A:ASP1032 4.3 9.3 1.0 CB A:ASP1040 4.4 5.0 1.0 O A:GLY1038 4.4 7.5 1.0 CA A:GLY1033 4.5 12.0 1.0 CA A:ILE1037 4.5 7.8 1.0 N A:ILE1037 4.5 8.3 1.0 CA A:SER1036 4.6 12.3 1.0 N A:ILE990 4.6 6.2 1.0 C A:ILE1037 4.7 7.7 1.0 O A:VAL987 4.7 8.8 1.0 CB A:ASP1035 4.7 13.7 1.0 N A:GLY1038 4.8 7.5 1.0 N A:ASP1035 4.8 15.1 1.0 C A:ALA988 4.8 6.1 1.0 C A:GLY1033 4.9 13.7 1.0 CG A:ASP1032 5.0 12.0 1.0 CG2 A:ILE990 5.0 7.1 1.0

K.Gregg, R.Finn, D.W.Abbott, A.B.Boraston. Divergent Modes of Glycan Recognition By A New Family of Carbohydrate-Binding Modules J.Biol.Chem. V. 283 12604 2008.
ISSN: ISSN 0021-9258
PubMed: 18292090
DOI: 10.1074/JBC.M709865200