Calcium in PDB 2vn7: Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina

All present enzymatic activity of Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina:
3.2.1.3;

The structure of Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina, PDB code: 2vn7 was solved by R.Bott, M.Sandgren, H.Hansson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	16.96 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	216.756, 48.490, 50.562, 90.00, 90.49, 90.00
R / Rfree (%)	20.1 / 25.3

The binding sites of Calcium atom in the Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina (pdb code 2vn7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina, PDB code: 2vn7:

Calcium binding site 1 out of 1 in the Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca650 b:12.0 occ:1.00 O A:ASN238 2.3 8.9 1.0 O A:HOH2143 2.3 13.3 1.0 OE2 A:GLU243 2.4 13.8 1.0 OD1 A:ASP236 2.4 7.1 1.0 O A:HOH2148 2.4 14.7 1.0 OD2 A:ASP236 2.5 10.1 1.0 OE1 A:GLU243 2.6 10.3 1.0 CG A:ASP236 2.8 8.8 1.0 CD A:GLU243 2.8 14.1 1.0 C A:ASN238 3.5 9.8 1.0 O A:HOH2144 4.1 24.4 1.0 CB A:ASP236 4.3 9.2 1.0 CA A:ASN238 4.4 10.1 1.0 N A:ASN238 4.4 9.1 1.0 CG A:GLU243 4.4 11.7 1.0 O A:THR241 4.4 13.1 1.0 O A:HOH2146 4.4 14.1 1.0 O A:HOH2140 4.4 19.6 1.0 N A:ILE239 4.5 10.2 1.0 CA A:GLY247 4.6 7.5 1.0 O A:ARG245 4.6 11.7 1.0 CA A:ILE239 4.6 10.8 1.0 CB A:ASN238 4.6 10.3 1.0 N A:GLY247 4.8 8.8 1.0 O A:THR246 4.9 9.7 1.0 CG2 A:ILE239 4.9 10.6 1.0 O A:HOH2139 4.9 20.4 1.0

R.Bott, M.Saldajeno, W.Cuevas, D.Ward, M.Scheffers, W.Aehle, S.Karkehabadi, M.Sandgren, H.Hansson. Three-Dimensional Structure of An Intact Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina. Biochemistry V. 47 5746 2008.
ISSN: ISSN 0006-2960
PubMed: 18457422
DOI: 10.1021/BI702413K