Atomistry » Calcium » PDB 2vvc-2w3j » 2w1s
Atomistry »
  Calcium »
    PDB 2vvc-2w3j »
      2w1s »

Calcium in PDB 2w1s: Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens

Enzymatic activity of Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens

All present enzymatic activity of Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens:
3.2.1.35;

Protein crystallography data

The structure of Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens, PDB code: 2w1s was solved by E.Ficko-Blean, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.325, 61.847, 82.993, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 22.6

Other elements in 2w1s:

The structure of Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens (pdb code 2w1s). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens, PDB code: 2w1s:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2w1s

Go back to Calcium Binding Sites List in 2w1s
Calcium binding site 1 out of 2 in the Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1946

b:12.2
occ:1.00
 O A:ASN825 2.3 12.5 1.0
O A:ASP830 2.3 12.1 1.0
OE1 A:GLU940 2.3 13.5 1.0
O A:THR833 2.4 10.4 1.0
OG1 A:THR833 2.5 10.0 1.0
O A:SER939 2.5 9.8 1.0
OD1 A:ASP828 2.5 10.2 1.0
C A:THR833 3.4 10.8 1.0
C A:ASP830 3.4 12.7 1.0
C A:ASN825 3.5 12.3 1.0
CG A:ASP828 3.5 12.0 1.0
CD A:GLU940 3.6 12.4 1.0
C A:SER939 3.7 10.7 1.0
CB A:THR833 3.7 12.6 1.0
OD2 A:ASP828 3.9 14.5 1.0
CA A:THR833 3.9 11.2 1.0
N A:THR833 4.0 11.7 1.0
N A:ASP830 4.0 13.3 1.0
CA A:ASP830 4.2 11.9 1.0
CB A:GLU940 4.3 10.2 1.0
CA A:ASN825 4.3 12.5 1.0
OE2 A:GLU940 4.3 15.4 1.0
CB A:ASP830 4.3 13.1 1.0
N A:LEU826 4.4 11.0 1.0
CA A:LEU826 4.4 10.7 1.0
N A:ASP831 4.4 12.8 1.0
CA A:GLU940 4.5 9.9 1.0
CG A:GLU940 4.5 11.8 1.0
CA A:SER939 4.5 9.7 1.0
N A:GLY834 4.5 11.0 1.0
CB A:ASN825 4.5 13.3 1.0
N A:GLU940 4.6 10.5 1.0
CA A:ASP831 4.6 12.5 1.0
C A:ASP831 4.6 12.4 1.0
C A:LEU826 4.7 11.9 1.0
N A:ASP828 4.7 12.7 1.0
CB A:ASP828 4.8 13.3 1.0
CB A:SER939 4.8 11.2 1.0
CG2 A:THR833 4.9 13.0 1.0
CA A:GLY834 4.9 10.4 1.0
N A:LEU827 4.9 11.5 1.0
N A:GLY829 4.9 13.9 1.0
N A:ASN832 4.9 12.1 1.0
O A:ASP831 5.0 13.7 1.0

Calcium binding site 2 out of 2 in 2w1s

Go back to Calcium Binding Sites List in 2w1s
Calcium binding site 2 out of 2 in the Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Unique Ligand Binding Specificity of A Family 32 Carbohydrate-Binding Module From the Mu Toxin Produced By Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1946

b:14.9
occ:1.00
 O B:ASN825 2.3 13.8 1.0
OE1 B:GLU940 2.3 14.2 1.0
O B:ASP830 2.4 16.1 1.0
OG1 B:THR833 2.4 11.8 1.0
O B:SER939 2.5 13.3 1.0
O B:THR833 2.5 13.1 1.0
OD1 B:ASP828 2.5 14.5 1.0
C B:THR833 3.4 13.5 1.0
C B:ASP830 3.5 16.9 1.0
C B:ASN825 3.5 14.4 1.0
CG B:ASP828 3.5 16.1 1.0
CD B:GLU940 3.5 13.8 1.0
C B:SER939 3.6 13.8 1.0
CB B:THR833 3.7 13.5 1.0
OD2 B:ASP828 3.8 15.1 1.0
CA B:THR833 3.9 13.9 1.0
N B:THR833 4.0 15.0 1.0
N B:ASP830 4.0 17.6 1.0
CA B:ASP830 4.2 16.9 1.0
CB B:GLU940 4.3 14.3 1.0
OE2 B:GLU940 4.3 17.8 1.0
CA B:ASN825 4.4 15.6 1.0
N B:LEU826 4.4 13.5 1.0
CB B:ASP830 4.4 17.6 1.0
N B:GLY834 4.4 13.0 1.0
CA B:LEU826 4.4 13.7 1.0
CG B:GLU940 4.5 15.3 1.0
CA B:SER939 4.5 14.0 1.0
CA B:GLU940 4.5 14.3 1.0
N B:ASP831 4.5 16.2 1.0
N B:GLU940 4.6 13.6 1.0
CB B:ASN825 4.6 16.4 1.0
N B:ASP828 4.6 15.5 1.0
C B:LEU826 4.7 14.5 1.0
CA B:ASP831 4.7 17.1 1.0
CB B:SER939 4.7 14.6 1.0
CB B:ASP828 4.8 16.3 1.0
CA B:GLY834 4.8 13.0 1.0
C B:ASP831 4.8 16.6 1.0
CG2 B:THR833 4.8 13.2 1.0
N B:GLY829 4.9 17.9 1.0

Reference:

E.Ficko-Blean, A.B.Boraston. N-Acetylglucosamine Recognition By A Family 32 Carbohydrate-Binding Module From Clostridium Perfringens Nagh. J.Mol.Biol. V. 390 208 2009.
ISSN: ISSN 0022-2836
PubMed: 19422833
DOI: 10.1016/J.JMB.2009.04.066
Page generated: Fri Jul 12 18:21:19 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy