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Calcium in PDB 2wbw: AD37 Fibre Head in Complex with Car D1 and Sialic Acid

Protein crystallography data

The structure of AD37 Fibre Head in Complex with Car D1 and Sialic Acid, PDB code: 2wbw was solved by E.Seiradake, D.Henaff, H.Wodrich, O.Billet, M.Perreau, C.Hippert, F.Mennechet, G.Schoehn, H.Lortat-Jacob, H.Dreja, S.Ibanes, V.Kalatzis, J.P.Wang, R.W.Finberg, S.Cusack, E.J.Kremer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.25 / 1.55
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 132.010, 132.010, 132.010, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 17.6

Calcium Binding Sites:

The binding sites of Calcium atom in the AD37 Fibre Head in Complex with Car D1 and Sialic Acid (pdb code 2wbw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the AD37 Fibre Head in Complex with Car D1 and Sialic Acid, PDB code: 2wbw:

Calcium binding site 1 out of 1 in 2wbw

Go back to Calcium Binding Sites List in 2wbw
Calcium binding site 1 out of 1 in the AD37 Fibre Head in Complex with Car D1 and Sialic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of AD37 Fibre Head in Complex with Car D1 and Sialic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1139

b:13.6
occ:1.00
OD1 B:ASN64 2.3 16.3 1.0
O B:HOH2055 2.4 13.3 1.0
O B:HOH2063 2.4 15.1 1.0
O B:HOH2056 2.5 16.6 1.0
CG B:ASN64 3.5 17.2 1.0
CB B:ASN64 4.1 15.9 1.0
CA B:ASN64 4.2 16.1 1.0
O B:PRO61 4.3 13.7 1.0
ND2 B:ASN64 4.5 18.0 1.0
CB B:SER60 4.5 11.6 1.0
O B:HOH2068 4.5 11.1 1.0
O B:ASN64 4.9 16.3 1.0

Reference:

E.Seiradake, D.Henaff, H.Wodrich, O.Billet, M.Perreau, C.Hippert, F.Mennechet, G.Schoehn, H.Lortat-Jacob, H.Dreja, S.Ibanes, V.Kalatzis, J.P.Wang, R.W.Finberg, S.Cusack, E.J.Kremer. The Cell Adhesion Molecule "Car" and Sialic Acid on Human Erythrocytes Influence Adenovirus in Vivo Biodistribution. Plos Pathog. V. 5 00277 2009.
ISSN: ISSN 1553-7366
PubMed: 19119424
DOI: 10.1371/JOURNAL.PPAT.1000277
Page generated: Sat Dec 12 03:55:40 2020

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