Calcium in PDB 2wbx: Crystal Structure of Mouse Cadherin-23 EC1

The structure of Crystal Structure of Mouse Cadherin-23 EC1, PDB code: 2wbx was solved by M.Sotomayor, W.Weihofen, R.Gaudet, D.P.Corey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.54 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	45.891, 49.540, 45.883, 90.00, 98.97, 90.00
R / Rfree (%)	17.218 / 19.87

The binding sites of Calcium atom in the Crystal Structure of Mouse Cadherin-23 EC1 (pdb code 2wbx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Mouse Cadherin-23 EC1, PDB code: 2wbx:

Calcium binding site 1 out of 1 in the Crystal Structure of Mouse Cadherin-23 EC1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Cadherin-23 EC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1103 b:14.1 occ:1.00 OD2 A:ASP41 2.3 9.9 1.0 OD1 A:ASN4 2.3 11.4 1.0 O A:ARG5 2.3 11.9 1.0 OD2 A:ASP39 2.4 8.6 1.0 OD2 A:ASP87 2.4 10.7 1.0 OD1 A:ASP37 2.4 10.5 1.0 OD2 A:ASP37 2.6 11.1 1.0 CG A:ASP37 2.9 10.2 1.0 CG A:ASN4 3.3 11.3 1.0 CG A:ASP41 3.4 11.1 1.0 CG A:ASP39 3.5 10.3 1.0 CG A:ASP87 3.5 11.0 1.0 C A:ARG5 3.5 12.1 1.0 ND2 A:ASN4 3.7 12.9 1.0 CB A:ASP39 3.8 8.2 1.0 CB A:ASP41 3.8 9.5 1.0 N A:ARG5 3.8 13.8 1.0 CB A:ASP87 3.9 11.2 1.0 CA A:ARG5 4.3 13.1 1.0 CB A:ASP37 4.4 10.9 1.0 OD1 A:ASP41 4.5 11.5 1.0 NE2 A:GLN89 4.5 31.5 1.0 N A:LEU6 4.5 11.9 1.0 CB A:ASN4 4.6 12.7 1.0 OD1 A:ASP87 4.6 11.9 1.0 OD1 A:ASP39 4.6 11.5 1.0 CA A:LEU6 4.6 11.2 1.0 N A:ASP39 4.6 9.3 1.0 C A:ASN4 4.7 14.3 1.0 CA A:ASN4 4.7 13.7 1.0 CA A:ASP39 4.8 9.0 1.0 CD A:PRO7 4.9 11.0 1.0 C A:LEU6 4.9 11.0 1.0 CB A:ARG5 4.9 13.6 1.0 N A:ASP41 5.0 9.2 1.0

M.Sotomayor, W.Weihofen, R.Gaudet, D.P.Corey. Structural Determinants of Cadherin-23 Function in Hearing and Deafness. Neuron V. 66 85 2010.
ISSN: ISSN 0896-6273
PubMed: 20399731
DOI: 10.1016/J.NEURON.2010.03.028