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Calcium in PDB 2wim: Crystal Structure of NCAM2 IG1-3

Protein crystallography data

The structure of Crystal Structure of NCAM2 IG1-3, PDB code: 2wim was solved by N.Kulahin, O.Kristensen, K.Rasmussen, J.Kastrup, V.Berezin, E.Bock, P.Walmod, M.Gajhede, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.57 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.390, 106.780, 188.740, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 28.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of NCAM2 IG1-3 (pdb code 2wim). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of NCAM2 IG1-3, PDB code: 2wim:

Calcium binding site 1 out of 1 in 2wim

Go back to Calcium Binding Sites List in 2wim
Calcium binding site 1 out of 1 in the Crystal Structure of NCAM2 IG1-3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of NCAM2 IG1-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1299

b:1.0
occ:1.00
O A:HOH2005 3.5 67.3 1.0
OG A:SER37 3.6 64.4 1.0
OD1 A:ASN82 3.9 91.5 1.0
O A:GLY35 4.3 88.2 1.0
CB A:SER37 4.4 56.6 1.0
OD1 B:ASP197 4.5 63.2 1.0
CG A:ASN82 4.6 0.5 1.0
ND2 A:ASN82 4.7 0.4 1.0
N A:SER37 4.8 63.6 1.0

Reference:

N.Kulahin, O.Kristensen, K.K.Rasmussen, L.Olsen, P.Rydberg, B.Vestergaard, J.S.Kastrup, V.Berezin, E.Bock, P.S.Walmod, M.Gajhede. Structural Model and Trans-Interaction of the Entire Ectodomain of the Olfactory Cell Adhesion Molecule. Structure V. 19 203 2011.
ISSN: ISSN 1878-4186
PubMed: 21300289
DOI: 10.1016/J.STR.2010.12.014
Page generated: Fri Jul 12 18:44:00 2024

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