Calcium in PDB 2woy: Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb

The structure of Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb, PDB code: 2woy was solved by N.Forsgren, K.Persson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.788 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	37.745, 50.290, 94.370, 90.00, 97.44, 90.00
R / Rfree (%)	18.01 / 20.77

The binding sites of Calcium atom in the Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb (pdb code 2woy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb, PDB code: 2woy:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2414 b:10.9 occ:1.00 O A:LYS1186 2.3 12.9 1.0 OD1 A:ASP1133 2.4 12.4 1.0 O A:TYR1134 2.4 11.0 1.0 O A:ALA1188 2.4 11.3 1.0 OE1 A:GLU1136 2.4 12.3 1.0 O A:HOH2106 2.4 14.3 1.0 C A:ALA1188 3.5 11.8 1.0 CD A:GLU1136 3.5 16.7 1.0 N A:ALA1188 3.5 11.9 1.0 C A:LYS1186 3.5 16.6 1.0 C A:TYR1134 3.5 11.5 1.0 CG A:ASP1133 3.6 13.9 1.0 OE2 A:GLU1136 3.9 21.2 1.0 C A:GLY1187 3.9 11.9 1.0 N A:TYR1134 4.0 8.3 1.0 CA A:ALA1188 4.0 12.8 1.0 C A:ASP1133 4.2 10.1 1.0 OD2 A:ASP1133 4.2 15.4 1.0 N A:GLU1136 4.3 9.9 1.0 CA A:GLY1187 4.4 16.9 1.0 N A:GLY1187 4.4 17.4 1.0 CA A:TYR1134 4.4 8.1 1.0 N A:PRO1135 4.4 8.7 1.0 CA A:LYS1186 4.5 14.4 1.0 O A:HOH2007 4.5 23.2 1.0 CA A:PRO1135 4.5 10.0 1.0 O A:GLY1187 4.5 14.9 1.0 CA A:ASP1133 4.5 10.2 1.0 O A:ASP1133 4.6 10.2 1.0 N A:LYS1186 4.6 13.1 1.0 CB A:ALA1188 4.6 14.1 1.0 N A:PHE1189 4.6 11.2 1.0 CB A:LYS1186 4.7 24.0 1.0 CB A:ASP1133 4.7 12.9 1.0 O A:HOH2105 4.8 17.5 1.0 CG A:GLU1136 4.8 13.2 1.0 CB A:GLU1136 4.9 14.5 1.0 CA A:PHE1189 5.0 10.4 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2415 b:7.9 occ:1.00 OD1 A:ASP1308 2.2 9.1 1.0 OE1 A:GLN1311 2.4 8.8 1.0 O A:TYR1309 2.4 8.1 1.0 O A:ASN1354 2.4 8.7 1.0 O A:HOH2251 2.5 12.4 1.0 O A:HOH2315 2.5 11.4 1.0 O A:GLY1355 2.6 8.6 1.0 C A:GLY1355 3.4 8.3 1.0 CD A:GLN1311 3.4 12.3 1.0 CG A:ASP1308 3.5 11.5 1.0 C A:ASN1354 3.5 7.6 1.0 C A:TYR1309 3.5 5.8 1.0 CA A:GLY1355 3.6 7.3 1.0 NE2 A:GLN1311 3.8 12.8 1.0 N A:TYR1309 3.8 5.4 1.0 N A:GLY1355 4.0 6.8 1.0 C A:ASP1308 4.0 5.7 1.0 OD2 A:ASP1308 4.2 15.7 1.0 O A:HOH2248 4.3 19.9 1.0 CA A:TYR1309 4.3 7.1 1.0 CA A:ASP1308 4.3 7.3 1.0 N A:GLN1311 4.4 6.9 1.0 O A:ASP1308 4.5 8.3 1.0 N A:ASP1310 4.5 5.0 1.0 CB A:ASP1308 4.5 7.2 1.0 N A:ILE1356 4.5 8.4 1.0 CG1 A:ILE1356 4.5 11.5 1.0 CA A:ASP1310 4.6 7.9 1.0 CA A:ASN1354 4.7 8.6 1.0 CG A:GLN1311 4.8 7.0 1.0 CB A:GLN1311 5.0 6.2 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2416 b:15.3 occ:1.00 O A:GLN1163 2.4 14.7 1.0 C A:GLN1163 3.5 10.6 1.0 N A:GLN1163 4.0 12.6 1.0 CA A:GLN1163 4.2 15.3 1.0 OE1 A:GLN1163 4.3 24.2 1.0 CB A:GLN1163 4.4 14.6 1.0 OE1 A:GLN1162 4.6 17.8 1.0 N A:TYR1164 4.6 11.7 1.0 CD A:GLN1163 4.7 17.3 1.0 CD1 A:TYR1164 4.8 13.7 1.0 CA A:TYR1164 4.9 13.2 1.0 C A:GLN1162 5.0 14.4 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the C-Terminal Domain of Streptococcus Gordonii Surface Protein Sspb within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2417 b:18.0 occ:1.00 O A:HOH2272 2.4 20.5 1.0 O A:HOH2338 2.4 17.5 1.0 O A:HOH2227 2.5 21.0 1.0 O A:HOH2052 2.5 34.6 1.0 O A:HOH2340 2.5 20.6 1.0 NH2 A:ARG1286 4.1 10.3 1.0 OE1 A:GLU1378 4.4 13.2 1.0 O A:HOH2337 4.5 23.3 1.0 O A:HOH2064 4.6 27.8 1.0 O A:HOH2051 4.6 27.6 1.0 O A:SER1325 4.6 10.4 1.0 O A:HOH2226 4.8 34.2 1.0

N.Forsgren, R.J.Lamont, K.Persson. Two Intramolecular Isopeptide Bonds Are Identified in the Crystal Structure of the Streptococcus Gordonii Sspb C-Terminal Domain. J.Mol.Biol. V. 397 740 2010.
ISSN: ISSN 0022-2836
PubMed: 20138058
DOI: 10.1016/J.JMB.2010.01.065