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Calcium in PDB 2wq5: Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2.

Enzymatic activity of Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2.

All present enzymatic activity of Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2.:
3.1.1.4;

Protein crystallography data

The structure of Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2., PDB code: 2wq5 was solved by D.Dalm, G.J.Palm, W.Hinrichs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.36 / 1.65
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 68.712, 68.712, 68.712, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23

Calcium Binding Sites:

The binding sites of Calcium atom in the Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2. (pdb code 2wq5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2., PDB code: 2wq5:

Calcium binding site 1 out of 1 in 2wq5

Go back to Calcium Binding Sites List in 2wq5
Calcium binding site 1 out of 1 in the Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A2. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1001

b:33.8
occ:0.33
 OD2 A:ASP39 2.4 30.2 1.0
OD1 A:ASP39 2.7 30.0 1.0
O A:HOH2064 2.7 38.3 1.0
CG A:ASP39 2.9 30.2 1.0
O A:HOH2066 4.3 51.2 1.0
O A:HOH2068 4.4 34.5 1.0
CB A:ASP39 4.4 28.8 1.0
O A:HOH2067 4.9 43.0 1.0

Reference:

D.Dalm, G.J.Palm, A.Aleksandrov, T.Simonson, W.Hinrichs. Non-Antibiotic Properties of Tetracyclines: Structural Basis For Inhibition of Secretory Phospholipase A(2). J.Mol.Biol. V. 398 83 2010.
ISSN: ISSN 0022-2836
PubMed: 20211188
DOI: 10.1016/J.JMB.2010.02.049
Page generated: Fri Jul 12 18:49:57 2024

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