Calcium in PDB 2ww0: Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
Protein crystallography data
The structure of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482, PDB code: 2ww0
was solved by
M.D.L.Suits,
A.Thompson,
Y.Zhu,
H.J.Gilbert,
G.J.Davies,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
218.23 /
2.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
107.810,
151.960,
218.619,
90.00,
93.43,
90.00
|
R / Rfree (%)
|
18.439 /
21.156
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
(pdb code 2ww0). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482, PDB code: 2ww0:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 2ww0
Go back to
Calcium Binding Sites List in 2ww0
Calcium binding site 1 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_01.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca800
b:28.4
occ:1.00
|
O13
|
A:SWA801
|
2.2
|
41.0
|
1.0
|
OD2
|
A:ASP644
|
2.3
|
18.9
|
1.0
|
O11
|
A:SWA801
|
2.5
|
39.2
|
1.0
|
OD1
|
A:ASN601
|
2.6
|
20.9
|
1.0
|
OE1
|
A:GLN602
|
2.6
|
17.4
|
1.0
|
O
|
A:HOH2097
|
2.7
|
2.0
|
1.0
|
C8
|
A:SWA801
|
3.1
|
40.0
|
1.0
|
CG
|
A:ASP644
|
3.3
|
15.7
|
1.0
|
C7
|
A:SWA801
|
3.3
|
39.8
|
1.0
|
C9
|
A:SWA801
|
3.4
|
40.7
|
1.0
|
OD1
|
A:ASP644
|
3.5
|
16.7
|
1.0
|
CD
|
A:GLN602
|
3.6
|
15.8
|
1.0
|
CG
|
A:ASN601
|
3.8
|
18.7
|
1.0
|
NE2
|
A:GLN602
|
3.9
|
17.0
|
1.0
|
CB
|
A:ASP642
|
4.1
|
12.6
|
1.0
|
OD2
|
A:ASP348
|
4.4
|
13.5
|
1.0
|
OE2
|
A:GLU585
|
4.5
|
18.4
|
1.0
|
ND2
|
A:ASN601
|
4.5
|
19.6
|
1.0
|
C3
|
A:SWA801
|
4.5
|
40.1
|
1.0
|
OD2
|
A:ASP642
|
4.5
|
15.4
|
1.0
|
OE2
|
A:GLU533
|
4.6
|
24.6
|
1.0
|
N4
|
A:SWA801
|
4.6
|
40.8
|
1.0
|
CB
|
A:ASP644
|
4.6
|
14.1
|
1.0
|
CZ3
|
A:TRP347
|
4.6
|
9.4
|
1.0
|
O
|
A:GLY600
|
4.8
|
16.3
|
1.0
|
CG
|
A:ASP642
|
4.8
|
13.2
|
1.0
|
C1
|
A:SWA801
|
4.8
|
38.9
|
1.0
|
O
|
A:ASP642
|
4.8
|
13.1
|
1.0
|
CA
|
A:ASN601
|
4.9
|
16.6
|
1.0
|
CB
|
A:ASN601
|
4.9
|
17.0
|
1.0
|
CG
|
A:GLN602
|
4.9
|
14.5
|
1.0
|
N
|
A:GLN602
|
4.9
|
15.7
|
1.0
|
|
Calcium binding site 2 out
of 8 in 2ww0
Go back to
Calcium Binding Sites List in 2ww0
Calcium binding site 2 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_02.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca800
b:11.4
occ:1.00
|
OD2
|
B:ASP644
|
2.3
|
18.8
|
1.0
|
O13
|
B:SWA801
|
2.4
|
17.4
|
1.0
|
OD1
|
B:ASN601
|
2.4
|
20.8
|
1.0
|
O
|
B:HOH2096
|
2.5
|
8.1
|
1.0
|
OE1
|
B:GLN602
|
2.6
|
17.5
|
1.0
|
O11
|
B:SWA801
|
2.8
|
9.5
|
1.0
|
C8
|
B:SWA801
|
3.4
|
13.5
|
1.0
|
CG
|
B:ASP644
|
3.4
|
15.7
|
1.0
|
C9
|
B:SWA801
|
3.4
|
15.0
|
1.0
|
CD
|
B:GLN602
|
3.5
|
15.9
|
1.0
|
CG
|
B:ASN601
|
3.6
|
18.6
|
1.0
|
C7
|
B:SWA801
|
3.7
|
13.4
|
1.0
|
NE2
|
B:GLN602
|
3.8
|
17.1
|
1.0
|
OD1
|
B:ASP644
|
3.8
|
16.8
|
1.0
|
O
|
B:HOH2095
|
3.9
|
11.6
|
1.0
|
CB
|
B:ASP642
|
4.1
|
12.5
|
1.0
|
OE2
|
B:GLU585
|
4.3
|
18.1
|
1.0
|
ND2
|
B:ASN601
|
4.4
|
19.1
|
1.0
|
OD2
|
B:ASP348
|
4.5
|
13.7
|
1.0
|
O
|
B:GLY600
|
4.5
|
16.5
|
1.0
|
OD2
|
B:ASP642
|
4.6
|
15.2
|
1.0
|
N4
|
B:SWA801
|
4.6
|
15.2
|
1.0
|
CA
|
B:ASN601
|
4.6
|
16.5
|
1.0
|
C3
|
B:SWA801
|
4.7
|
14.3
|
1.0
|
CB
|
B:ASN601
|
4.7
|
17.0
|
1.0
|
OE2
|
B:GLU533
|
4.7
|
24.8
|
1.0
|
CZ3
|
B:TRP347
|
4.7
|
9.5
|
1.0
|
CB
|
B:ASP644
|
4.7
|
14.0
|
1.0
|
N
|
B:GLN602
|
4.8
|
15.7
|
1.0
|
O
|
B:ASP642
|
4.8
|
12.9
|
1.0
|
CG
|
B:ASP642
|
4.8
|
13.2
|
1.0
|
C1
|
B:SWA801
|
4.9
|
14.4
|
1.0
|
CG
|
B:GLN602
|
4.9
|
14.4
|
1.0
|
|
Calcium binding site 3 out
of 8 in 2ww0
Go back to
Calcium Binding Sites List in 2ww0
Calcium binding site 3 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_03.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca800
b:23.8
occ:1.00
|
O13
|
C:SWA801
|
2.1
|
24.2
|
1.0
|
OD2
|
C:ASP644
|
2.4
|
18.9
|
1.0
|
OD1
|
C:ASN601
|
2.4
|
21.0
|
1.0
|
OE1
|
C:GLN602
|
2.8
|
17.4
|
1.0
|
O
|
C:HOH2061
|
2.8
|
3.2
|
1.0
|
O11
|
C:SWA801
|
3.1
|
21.8
|
1.0
|
C8
|
C:SWA801
|
3.4
|
22.6
|
1.0
|
CG
|
C:ASP644
|
3.5
|
15.7
|
1.0
|
CG
|
C:ASN601
|
3.6
|
18.8
|
1.0
|
CD
|
C:GLN602
|
3.7
|
16.0
|
1.0
|
C9
|
C:SWA801
|
3.8
|
21.8
|
1.0
|
OD1
|
C:ASP644
|
3.8
|
16.9
|
1.0
|
CB
|
C:ASP642
|
3.8
|
12.5
|
1.0
|
C7
|
C:SWA801
|
3.9
|
21.5
|
1.0
|
NE2
|
C:GLN602
|
3.9
|
16.9
|
1.0
|
O
|
C:HOH2055
|
4.1
|
17.4
|
1.0
|
OE2
|
C:GLU585
|
4.2
|
18.4
|
1.0
|
O
|
C:GLY600
|
4.3
|
16.7
|
1.0
|
OD2
|
C:ASP642
|
4.4
|
15.4
|
1.0
|
ND2
|
C:ASN601
|
4.4
|
19.6
|
1.0
|
CG
|
C:ASP642
|
4.5
|
13.4
|
1.0
|
CA
|
C:ASN601
|
4.6
|
16.4
|
1.0
|
O
|
C:ASP642
|
4.6
|
12.8
|
1.0
|
CB
|
C:ASN601
|
4.7
|
16.9
|
1.0
|
OE2
|
C:GLU533
|
4.7
|
24.4
|
1.0
|
OD2
|
C:ASP348
|
4.7
|
13.6
|
1.0
|
CA
|
C:ASP642
|
4.8
|
12.5
|
1.0
|
CB
|
C:ASP644
|
4.8
|
14.0
|
1.0
|
N4
|
C:SWA801
|
4.8
|
21.8
|
1.0
|
N
|
C:ASP642
|
4.8
|
12.2
|
1.0
|
C3
|
C:SWA801
|
4.9
|
21.4
|
1.0
|
N
|
C:GLN602
|
4.9
|
15.7
|
1.0
|
|
Calcium binding site 4 out
of 8 in 2ww0
Go back to
Calcium Binding Sites List in 2ww0
Calcium binding site 4 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_04.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca800
b:30.5
occ:1.00
|
OD2
|
D:ASP644
|
2.1
|
18.7
|
1.0
|
O13
|
D:SWA801
|
2.2
|
20.3
|
1.0
|
OE1
|
D:GLN602
|
2.4
|
17.5
|
1.0
|
OD1
|
D:ASN601
|
2.5
|
20.8
|
1.0
|
O
|
D:HOH2094
|
2.7
|
2.0
|
1.0
|
O11
|
D:SWA801
|
2.8
|
21.6
|
1.0
|
CG
|
D:ASP644
|
3.2
|
15.6
|
1.0
|
CD
|
D:GLN602
|
3.2
|
15.9
|
1.0
|
NE2
|
D:GLN602
|
3.4
|
17.1
|
1.0
|
C8
|
D:SWA801
|
3.5
|
20.0
|
1.0
|
OD1
|
D:ASP644
|
3.7
|
16.6
|
1.0
|
C7
|
D:SWA801
|
3.7
|
20.4
|
1.0
|
CG
|
D:ASN601
|
3.7
|
18.6
|
1.0
|
CB
|
D:ASP642
|
4.0
|
12.4
|
1.0
|
C9
|
D:SWA801
|
4.3
|
18.4
|
1.0
|
O
|
D:GLY600
|
4.3
|
16.3
|
1.0
|
OD2
|
D:ASP348
|
4.4
|
13.7
|
1.0
|
CB
|
D:ASP644
|
4.5
|
13.9
|
1.0
|
O
|
D:ASP642
|
4.5
|
12.6
|
1.0
|
CA
|
D:ASN601
|
4.5
|
16.6
|
1.0
|
ND2
|
D:ASN601
|
4.6
|
19.3
|
1.0
|
N
|
D:GLN602
|
4.6
|
15.6
|
1.0
|
OE2
|
D:GLU585
|
4.7
|
18.0
|
1.0
|
OD2
|
D:ASP642
|
4.7
|
15.2
|
1.0
|
CB
|
D:ASN601
|
4.7
|
17.0
|
1.0
|
CG
|
D:GLN602
|
4.7
|
14.5
|
1.0
|
CG
|
D:ASP642
|
4.8
|
13.4
|
1.0
|
C3
|
D:SWA801
|
4.8
|
19.1
|
1.0
|
CA
|
D:ASP642
|
4.9
|
12.4
|
1.0
|
CZ3
|
D:TRP347
|
4.9
|
9.5
|
1.0
|
N
|
D:ASP642
|
4.9
|
12.3
|
1.0
|
N4
|
D:SWA801
|
4.9
|
18.1
|
1.0
|
OE2
|
D:GLU533
|
5.0
|
24.3
|
1.0
|
C
|
D:ASP642
|
5.0
|
12.7
|
1.0
|
|
Calcium binding site 5 out
of 8 in 2ww0
Go back to
Calcium Binding Sites List in 2ww0
Calcium binding site 5 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_05.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca800
b:33.9
occ:1.00
|
OD2
|
E:ASP644
|
1.9
|
18.8
|
1.0
|
OE1
|
E:GLN602
|
2.5
|
17.5
|
1.0
|
O13
|
E:SWA801
|
2.5
|
12.7
|
1.0
|
OD1
|
E:ASN601
|
2.5
|
20.8
|
1.0
|
CG
|
E:ASP644
|
3.1
|
15.8
|
1.0
|
O11
|
E:SWA801
|
3.2
|
13.4
|
1.0
|
CD
|
E:GLN602
|
3.3
|
15.9
|
1.0
|
NE2
|
E:GLN602
|
3.5
|
17.0
|
1.0
|
OD1
|
E:ASP644
|
3.5
|
17.0
|
1.0
|
C8
|
E:SWA801
|
3.5
|
14.0
|
1.0
|
C9
|
E:SWA801
|
3.7
|
13.4
|
1.0
|
CG
|
E:ASN601
|
3.8
|
18.6
|
1.0
|
CB
|
E:ASP642
|
3.8
|
12.4
|
1.0
|
C7
|
E:SWA801
|
4.0
|
13.3
|
1.0
|
O
|
E:GLY600
|
4.2
|
16.4
|
1.0
|
O
|
E:ASP642
|
4.3
|
12.9
|
1.0
|
CB
|
E:ASP644
|
4.4
|
14.1
|
1.0
|
CA
|
E:ASN601
|
4.5
|
16.5
|
1.0
|
OD2
|
E:ASP348
|
4.5
|
13.8
|
1.0
|
OD2
|
E:ASP642
|
4.6
|
15.6
|
1.0
|
CA
|
E:ASP642
|
4.7
|
12.4
|
1.0
|
CG
|
E:ASP642
|
4.7
|
13.4
|
1.0
|
ND2
|
E:ASN601
|
4.7
|
19.3
|
1.0
|
CB
|
E:ASN601
|
4.7
|
16.9
|
1.0
|
N
|
E:GLN602
|
4.7
|
15.6
|
1.0
|
OE2
|
E:GLU585
|
4.7
|
18.3
|
1.0
|
N
|
E:ASP642
|
4.7
|
12.2
|
1.0
|
CG
|
E:GLN602
|
4.8
|
14.6
|
1.0
|
C
|
E:ASP642
|
4.8
|
12.8
|
1.0
|
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Calcium binding site 6 out
of 8 in 2ww0
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Calcium Binding Sites List in 2ww0
Calcium binding site 6 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_06.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca800
b:22.5
occ:1.00
|
OD2
|
F:ASP644
|
2.0
|
18.8
|
1.0
|
OE1
|
F:GLN602
|
2.3
|
17.5
|
1.0
|
OD1
|
F:ASN601
|
2.4
|
20.9
|
1.0
|
O11
|
F:SWA801
|
2.5
|
24.8
|
1.0
|
O13
|
F:SWA801
|
2.5
|
22.3
|
1.0
|
CD
|
F:GLN602
|
3.1
|
16.0
|
1.0
|
CG
|
F:ASP644
|
3.1
|
15.8
|
1.0
|
NE2
|
F:GLN602
|
3.4
|
17.1
|
1.0
|
C7
|
F:SWA801
|
3.5
|
24.2
|
1.0
|
C8
|
F:SWA801
|
3.5
|
23.7
|
1.0
|
CG
|
F:ASN601
|
3.6
|
18.6
|
1.0
|
OD1
|
F:ASP644
|
3.6
|
16.8
|
1.0
|
CB
|
F:ASP642
|
4.0
|
12.4
|
1.0
|
O
|
F:GLY600
|
4.2
|
16.6
|
1.0
|
CA
|
F:ASN601
|
4.3
|
16.5
|
1.0
|
OD2
|
F:ASP348
|
4.3
|
13.7
|
1.0
|
O
|
F:ASP642
|
4.3
|
12.9
|
1.0
|
CB
|
F:ASP644
|
4.4
|
14.1
|
1.0
|
N
|
F:GLN602
|
4.5
|
15.6
|
1.0
|
N4
|
F:SWA801
|
4.5
|
24.9
|
1.0
|
C9
|
F:SWA801
|
4.5
|
23.9
|
1.0
|
CB
|
F:ASN601
|
4.5
|
16.9
|
1.0
|
ND2
|
F:ASN601
|
4.6
|
19.5
|
1.0
|
CG
|
F:GLN602
|
4.6
|
14.6
|
1.0
|
C3
|
F:SWA801
|
4.6
|
24.5
|
1.0
|
OE2
|
F:GLU585
|
4.8
|
18.3
|
1.0
|
CA
|
F:ASP642
|
4.8
|
12.5
|
1.0
|
OD2
|
F:ASP642
|
4.8
|
15.2
|
1.0
|
N
|
F:ASP642
|
4.9
|
12.4
|
1.0
|
CG
|
F:ASP642
|
4.9
|
13.2
|
1.0
|
CZ3
|
F:TRP347
|
4.9
|
9.3
|
1.0
|
C
|
F:ASP642
|
4.9
|
12.8
|
1.0
|
C
|
F:ASN601
|
4.9
|
16.2
|
1.0
|
|
Calcium binding site 7 out
of 8 in 2ww0
Go back to
Calcium Binding Sites List in 2ww0
Calcium binding site 7 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_07.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca800
b:39.1
occ:1.00
|
OD2
|
G:ASP644
|
2.1
|
18.7
|
1.0
|
O13
|
G:SWA801
|
2.2
|
40.5
|
1.0
|
OE1
|
G:GLN602
|
2.3
|
17.5
|
1.0
|
C8
|
G:SWA801
|
2.4
|
41.5
|
1.0
|
OD1
|
G:ASN601
|
2.4
|
20.7
|
1.0
|
O11
|
G:SWA801
|
2.8
|
45.1
|
1.0
|
C7
|
G:SWA801
|
2.9
|
42.5
|
1.0
|
CD
|
G:GLN602
|
3.1
|
16.0
|
1.0
|
CG
|
G:ASP644
|
3.2
|
15.7
|
1.0
|
NE2
|
G:GLN602
|
3.2
|
16.9
|
1.0
|
CG
|
G:ASN601
|
3.6
|
18.5
|
1.0
|
OD1
|
G:ASP644
|
3.8
|
16.9
|
1.0
|
O
|
G:GLY600
|
3.8
|
16.4
|
1.0
|
CB
|
G:ASP642
|
3.9
|
12.5
|
1.0
|
C9
|
G:SWA801
|
3.9
|
40.5
|
1.0
|
O
|
G:ASP642
|
4.1
|
12.9
|
1.0
|
CA
|
G:ASN601
|
4.1
|
16.5
|
1.0
|
C5
|
G:SWA801
|
4.4
|
40.1
|
1.0
|
C3
|
G:SWA801
|
4.4
|
41.0
|
1.0
|
N
|
G:GLN602
|
4.4
|
15.6
|
1.0
|
CB
|
G:ASP644
|
4.4
|
14.0
|
1.0
|
CB
|
G:ASN601
|
4.4
|
16.9
|
1.0
|
N4
|
G:SWA801
|
4.6
|
40.5
|
1.0
|
CG
|
G:GLN602
|
4.6
|
14.6
|
1.0
|
CA
|
G:ASP642
|
4.6
|
12.5
|
1.0
|
N
|
G:ASP642
|
4.6
|
12.3
|
1.0
|
OD2
|
G:ASP348
|
4.6
|
13.6
|
1.0
|
ND2
|
G:ASN601
|
4.6
|
19.4
|
1.0
|
C
|
G:ASP642
|
4.7
|
12.8
|
1.0
|
CG
|
G:ASP642
|
4.8
|
13.3
|
1.0
|
OD2
|
G:ASP642
|
4.8
|
15.2
|
1.0
|
C
|
G:GLY600
|
4.8
|
16.0
|
1.0
|
C
|
G:ASN601
|
4.8
|
16.3
|
1.0
|
OE2
|
G:GLU585
|
4.9
|
18.3
|
1.0
|
|
Calcium binding site 8 out
of 8 in 2ww0
Go back to
Calcium Binding Sites List in 2ww0
Calcium binding site 8 out
of 8 in the Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_08.jpg) Mono view
![](/pictures/CA/pdb/ww/2ww0-CA-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of the Family GH92 Inverting Mannosidase BT3990 From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca800
b:43.2
occ:1.00
|
O13
|
H:SWA801
|
1.9
|
26.1
|
1.0
|
OD2
|
H:ASP644
|
2.1
|
18.7
|
1.0
|
O11
|
H:SWA801
|
2.2
|
29.3
|
1.0
|
OE1
|
H:GLN602
|
2.4
|
17.4
|
1.0
|
OD1
|
H:ASN601
|
2.5
|
20.9
|
1.0
|
C8
|
H:SWA801
|
3.0
|
27.5
|
1.0
|
C7
|
H:SWA801
|
3.2
|
28.2
|
1.0
|
CD
|
H:GLN602
|
3.2
|
16.0
|
1.0
|
CG
|
H:ASP644
|
3.2
|
15.6
|
1.0
|
NE2
|
H:GLN602
|
3.3
|
17.0
|
1.0
|
C9
|
H:SWA801
|
3.6
|
28.0
|
1.0
|
CG
|
H:ASN601
|
3.7
|
18.5
|
1.0
|
OD1
|
H:ASP644
|
3.7
|
16.7
|
1.0
|
CB
|
H:ASP642
|
3.8
|
12.6
|
1.0
|
O
|
H:GLY600
|
3.9
|
16.5
|
1.0
|
O
|
H:ASP642
|
4.1
|
12.9
|
1.0
|
CA
|
H:ASN601
|
4.3
|
16.5
|
1.0
|
C3
|
H:SWA801
|
4.3
|
28.6
|
1.0
|
C1
|
H:SWA801
|
4.4
|
30.4
|
1.0
|
CB
|
H:ASP644
|
4.5
|
14.0
|
1.0
|
CB
|
H:ASN601
|
4.5
|
16.9
|
1.0
|
N
|
H:GLN602
|
4.5
|
15.6
|
1.0
|
CA
|
H:ASP642
|
4.6
|
12.5
|
1.0
|
N
|
H:ASP642
|
4.6
|
12.2
|
1.0
|
OD2
|
H:ASP348
|
4.6
|
13.6
|
1.0
|
ND2
|
H:ASN601
|
4.6
|
19.2
|
1.0
|
CG
|
H:GLN602
|
4.7
|
14.6
|
1.0
|
N4
|
H:SWA801
|
4.7
|
27.0
|
1.0
|
C
|
H:ASP642
|
4.7
|
12.7
|
1.0
|
CG
|
H:ASP642
|
4.7
|
13.3
|
1.0
|
OD2
|
H:ASP642
|
4.7
|
15.1
|
1.0
|
OE2
|
H:GLU585
|
4.7
|
18.1
|
1.0
|
O1
|
H:SWA801
|
4.8
|
33.5
|
1.0
|
C
|
H:GLY600
|
4.9
|
15.9
|
1.0
|
C
|
H:ASN601
|
5.0
|
16.3
|
1.0
|
|
Reference:
Y.Zhu,
M.D.L.Suits,
A.Thompson,
S.Chavan,
Z.Dinev,
C.Dumon,
N.Smith,
K.W.Moremen,
Y.Xiang,
A.Siriwardena,
S.J.Williams,
H.J.Gilbert,
G.J.Davies.
Mechanistic Insights Into A CA2+-Dependent Family of A-Mannosidases in A Human Gut Symbiont. Nat.Chem.Biol. V. 6 125 2010.
ISSN: ISSN 1552-4450
PubMed: 20081828
DOI: 10.1038/NCHEMBIO.278
Page generated: Fri Jul 12 18:54:01 2024
|