Calcium in PDB 2y83: Actin Filament Pointed End

The binding sites of Calcium atom in the Actin Filament Pointed End (pdb code 2y83). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Actin Filament Pointed End, PDB code: 2y83:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Actin Filament Pointed End within 5.0Å range: probe atom residue distance (Å) B Occ O:Ca500 b:0.0 occ:1.00 O3B O:ADP400 2.1 0.0 1.0 O1B O:ADP400 2.1 0.0 1.0 OD1 O:ASP11 2.2 0.0 1.0 OD2 O:ASP11 2.3 0.0 1.0 OE1 O:GLN137 2.4 0.0 1.0 O O:ASN12 2.4 0.0 1.0 CG O:ASP11 2.6 0.0 1.0 PB O:ADP400 2.8 0.0 1.0 HZ1 O:LYS18 3.1 0.0 1.0 HA3 O:GLY13 3.5 0.0 1.0 HG22 O:THR106 3.5 0.0 1.0 CD O:GLN137 3.6 0.0 1.0 C O:ASN12 3.6 0.0 1.0 HZ2 O:LYS18 3.7 0.0 1.0 O2B O:ADP400 3.7 0.0 1.0 HA2 O:GLY13 3.9 0.0 1.0 NZ O:LYS18 3.9 0.0 1.0 HE22 O:GLN137 3.9 0.0 1.0 O3A O:ADP400 4.0 0.0 1.0 CA O:GLY13 4.0 0.0 1.0 CB O:ASP11 4.1 0.0 1.0 NE2 O:GLN137 4.2 0.0 1.0 H O:ASN12 4.3 0.0 1.0 N O:GLY13 4.4 0.0 1.0 HZ3 O:LYS18 4.4 0.0 1.0 N O:ASN12 4.5 0.0 1.0 CG2 O:THR106 4.5 0.0 1.0 HG23 O:THR106 4.6 0.0 1.0 HG2 O:GLN137 4.6 0.0 1.0 HB3 O:ASP11 4.6 0.0 1.0 HB2 O:ASP11 4.7 0.0 1.0 HB O:VAL339 4.7 0.0 1.0 CA O:ASN12 4.7 0.0 1.0 C O:ASP11 4.7 0.0 1.0 CG O:GLN137 4.8 0.0 1.0 HE2 O:LYS18 4.8 0.0 1.0 HA O:ASP11 4.8 0.0 1.0 HG21 O:THR106 4.8 0.0 1.0 CG2 O:VAL339 4.8 0.0 1.0 CA O:ASP11 4.9 0.0 1.0 PA O:ADP400 4.9 0.0 1.0 O1A O:ADP400 4.9 0.0 1.0 CG1 O:VAL339 4.9 0.0 1.0 CE O:LYS18 5.0 0.0 1.0

Calcium binding site 2 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Actin Filament Pointed End within 5.0Å range: probe atom residue distance (Å) B Occ P:Ca500 b:0.0 occ:1.00 O3B P:ADP400 2.1 0.0 1.0 O1B P:ADP400 2.1 0.0 1.0 OD1 P:ASP11 2.2 0.0 1.0 OD2 P:ASP11 2.3 0.0 1.0 OE1 P:GLN137 2.4 0.0 1.0 O P:ASN12 2.4 0.0 1.0 CG P:ASP11 2.6 0.0 1.0 PB P:ADP400 2.8 0.0 1.0 HZ1 P:LYS18 3.1 0.0 1.0 HZ2 P:LYS18 3.5 0.0 1.0 HG22 P:THR106 3.5 0.0 1.0 HA3 P:GLY13 3.5 0.0 1.0 CD P:GLN137 3.6 0.0 1.0 C P:ASN12 3.6 0.0 1.0 O2B P:ADP400 3.7 0.0 1.0 NZ P:LYS18 3.8 0.0 1.0 HE22 P:GLN137 3.9 0.0 1.0 O3A P:ADP400 4.0 0.0 1.0 HA2 P:GLY13 4.1 0.0 1.0 CB P:ASP11 4.1 0.0 1.0 CA P:GLY13 4.1 0.0 1.0 NE2 P:GLN137 4.2 0.0 1.0 N P:GLY13 4.4 0.0 1.0 HZ3 P:LYS18 4.4 0.0 1.0 CG2 P:THR106 4.5 0.0 1.0 HG2 P:GLN137 4.5 0.0 1.0 HG23 P:THR106 4.6 0.0 1.0 HB3 P:ASP11 4.6 0.0 1.0 HE2 P:LYS18 4.6 0.0 1.0 HB P:VAL339 4.6 0.0 1.0 N P:ASN12 4.6 0.0 1.0 C P:ASP11 4.6 0.0 1.0 HB2 P:ASP11 4.7 0.0 1.0 CG2 P:VAL339 4.7 0.0 1.0 CG P:GLN137 4.7 0.0 1.0 CA P:ASN12 4.8 0.0 1.0 H P:ASN12 4.8 0.0 1.0 CA P:ASP11 4.8 0.0 1.0 HG21 P:THR106 4.8 0.0 1.0 HA P:ASP11 4.9 0.0 1.0 CE P:LYS18 4.9 0.0 1.0 PA P:ADP400 4.9 0.0 1.0 CG1 P:VAL339 4.9 0.0 1.0 O P:ASP11 5.0 0.0 1.0 O1A P:ADP400 5.0 0.0 1.0

Calcium binding site 3 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Actin Filament Pointed End within 5.0Å range: probe atom residue distance (Å) B Occ Q:Ca500 b:0.0 occ:1.00 O3B Q:ADP400 2.1 0.0 1.0 O1B Q:ADP400 2.1 0.0 1.0 OE1 Q:GLN137 2.1 0.0 1.0 O1A Q:ADP400 2.2 0.0 1.0 OD2 Q:ASP11 2.2 0.0 1.0 OD1 Q:ASP11 2.2 0.0 1.0 CG Q:ASP11 2.6 0.0 1.0 PB Q:ADP400 2.7 0.0 1.0 HZ2 Q:LYS18 3.2 0.0 1.0 PA Q:ADP400 3.2 0.0 1.0 CD Q:GLN137 3.3 0.0 1.0 O3A Q:ADP400 3.4 0.0 1.0 HE22 Q:GLN137 3.5 0.0 1.0 HG1 Q:THR106 3.6 0.0 1.0 HZ3 Q:LYS18 3.7 0.0 1.0 H Q:GLY13 3.7 0.0 1.0 HG23 Q:THR106 3.8 0.0 1.0 O2A Q:ADP400 3.9 0.0 1.0 NE2 Q:GLN137 3.9 0.0 1.0 NZ Q:LYS18 3.9 0.0 1.0 O2B Q:ADP400 4.1 0.0 1.0 CB Q:ASP11 4.1 0.0 1.0 HE2 Q:LYS18 4.1 0.0 1.0 HA3 Q:GLY156 4.3 0.0 1.0 HG3 Q:GLN137 4.4 0.0 1.0 OG1 Q:THR106 4.5 0.0 1.0 HA2 Q:GLY156 4.5 0.0 1.0 O5' Q:ADP400 4.5 0.0 1.0 CG Q:GLN137 4.5 0.0 1.0 HB3 Q:ASP11 4.5 0.0 1.0 H Q:ASP157 4.6 0.0 1.0 N Q:GLY13 4.6 0.0 1.0 HB2 Q:ASP11 4.6 0.0 1.0 CE Q:LYS18 4.7 0.0 1.0 C Q:ASP11 4.7 0.0 1.0 HA3 Q:GLY13 4.7 0.0 1.0 HZ1 Q:LYS18 4.7 0.0 1.0 N Q:ASN12 4.7 0.0 1.0 HE21 Q:GLN137 4.8 0.0 1.0 H Q:ASN12 4.8 0.0 1.0 CG1 Q:VAL339 4.8 0.0 1.0 HA Q:ASP11 4.8 0.0 1.0 CA Q:ASP11 4.8 0.0 1.0 CG2 Q:THR106 4.8 0.0 1.0 H Q:GLY302 4.9 0.0 1.0 CA Q:GLY156 4.9 0.0 1.0 O Q:ASP11 5.0 0.0 1.0 HB2 Q:GLN137 5.0 0.0 1.0

Calcium binding site 4 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Actin Filament Pointed End within 5.0Å range: probe atom residue distance (Å) B Occ R:Ca500 b:0.0 occ:1.00 O3B R:ADP400 2.1 0.0 1.0 O1B R:ADP400 2.1 0.0 1.0 OE1 R:GLN137 2.2 0.0 1.0 OD1 R:ASP11 2.2 0.0 1.0 OD2 R:ASP11 2.2 0.0 1.0 CG R:ASP11 2.6 0.0 1.0 PB R:ADP400 2.7 0.0 1.0 HZ2 R:LYS18 3.1 0.0 1.0 HG1 R:THR106 3.3 0.0 1.0 CD R:GLN137 3.3 0.0 1.0 HZ3 R:LYS18 3.8 0.0 1.0 O3A R:ADP400 3.8 0.0 1.0 O2B R:ADP400 3.8 0.0 1.0 HA2 R:GLY13 3.9 0.0 1.0 NZ R:LYS18 3.9 0.0 1.0 HE22 R:GLN137 3.9 0.0 1.0 NE2 R:GLN137 4.1 0.0 1.0 OG1 R:THR106 4.1 0.0 1.0 CB R:ASP11 4.1 0.0 1.0 HG23 R:THR106 4.1 0.0 1.0 HG3 R:GLN137 4.2 0.0 1.0 HA3 R:GLY13 4.3 0.0 1.0 CG R:GLN137 4.3 0.0 1.0 HE2 R:LYS18 4.4 0.0 1.0 HG2 R:GLN137 4.5 0.0 1.0 CA R:GLY13 4.5 0.0 1.0 O1A R:ADP400 4.5 0.0 1.0 HZ1 R:LYS18 4.5 0.0 1.0 HB3 R:ASP11 4.5 0.0 1.0 HB2 R:ASP11 4.6 0.0 1.0 HA3 R:GLY156 4.6 0.0 1.0 PA R:ADP400 4.6 0.0 1.0 CE R:LYS18 4.8 0.0 1.0 CG1 R:VAL339 4.8 0.0 1.0 HA R:ASP11 4.8 0.0 1.0 O R:ASP11 4.8 0.0 1.0 N R:GLY13 4.8 0.0 1.0 HB R:VAL339 4.9 0.0 1.0 CG2 R:THR106 4.9 0.0 1.0 CA R:ASP11 4.9 0.0 1.0 C R:ASP11 4.9 0.0 1.0 HE21 R:GLN137 4.9 0.0 1.0 CB R:THR106 5.0 0.0 1.0

Calcium binding site 5 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Actin Filament Pointed End within 5.0Å range: probe atom residue distance (Å) B Occ S:Ca500 b:0.0 occ:1.00 O3B S:ADP400 2.1 0.0 1.0 O1B S:ADP400 2.1 0.0 1.0 OE1 S:GLN137 2.2 0.0 1.0 O1A S:ADP400 2.2 0.0 1.0 OD2 S:ASP11 2.2 0.0 1.0 OD1 S:ASP11 2.2 0.0 1.0 CG S:ASP11 2.6 0.0 1.0 PB S:ADP400 2.7 0.0 1.0 PA S:ADP400 3.2 0.0 1.0 HZ2 S:LYS18 3.2 0.0 1.0 CD S:GLN137 3.4 0.0 1.0 O3A S:ADP400 3.4 0.0 1.0 H S:GLY13 3.7 0.0 1.0 HG1 S:THR106 3.7 0.0 1.0 HZ3 S:LYS18 3.8 0.0 1.0 HG23 S:THR106 3.8 0.0 1.0 O2A S:ADP400 3.8 0.0 1.0 HE22 S:GLN137 3.9 0.0 1.0 NZ S:LYS18 4.0 0.0 1.0 O2B S:ADP400 4.1 0.0 1.0 CB S:ASP11 4.1 0.0 1.0 NE2 S:GLN137 4.1 0.0 1.0 HA3 S:GLY156 4.3 0.0 1.0 HG3 S:GLN137 4.3 0.0 1.0 HE2 S:LYS18 4.3 0.0 1.0 HA2 S:GLY156 4.4 0.0 1.0 CG S:GLN137 4.5 0.0 1.0 N S:GLY13 4.5 0.0 1.0 O5' S:ADP400 4.5 0.0 1.0 HB3 S:ASP11 4.5 0.0 1.0 HA S:ASN12 4.6 0.0 1.0 C S:ASP11 4.6 0.0 1.0 OG1 S:THR106 4.6 0.0 1.0 HB2 S:ASP11 4.7 0.0 1.0 H S:ASP157 4.7 0.0 1.0 N S:ASN12 4.7 0.0 1.0 HA3 S:GLY13 4.7 0.0 1.0 HZ1 S:LYS18 4.7 0.0 1.0 CE S:LYS18 4.8 0.0 1.0 CG2 S:THR106 4.8 0.0 1.0 CA S:ASP11 4.8 0.0 1.0 CA S:GLY156 4.8 0.0 1.0 O S:ASP11 4.9 0.0 1.0 HA S:ASP11 4.9 0.0 1.0 H S:ASN12 4.9 0.0 1.0 HB2 S:GLN137 5.0 0.0 1.0 H S:GLY302 5.0 0.0 1.0

Calcium binding site 6 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Actin Filament Pointed End within 5.0Å range: probe atom residue distance (Å) B Occ T:Ca500 b:0.0 occ:1.00 O1B T:ADP400 2.1 0.0 1.0 OD1 T:ASP11 2.1 0.0 1.0 O3B T:ADP400 2.1 0.0 1.0 O1A T:ADP400 2.2 0.0 1.0 OE1 T:GLN137 2.2 0.0 1.0 OD2 T:ASP11 2.2 0.0 1.0 CG T:ASP11 2.6 0.0 1.0 PB T:ADP400 2.7 0.0 1.0 HZ2 T:LYS18 3.2 0.0 1.0 PA T:ADP400 3.2 0.0 1.0 CD T:GLN137 3.4 0.0 1.0 O3A T:ADP400 3.4 0.0 1.0 HG23 T:THR106 3.5 0.0 1.0 HZ3 T:LYS18 3.6 0.0 1.0 HA3 T:GLY156 3.7 0.0 1.0 O2A T:ADP400 3.9 0.0 1.0 HG3 T:GLN137 3.9 0.0 1.0 NZ T:LYS18 3.9 0.0 1.0 O2B T:ADP400 4.0 0.0 1.0 CB T:ASP11 4.0 0.0 1.0 H T:ASP157 4.1 0.0 1.0 H T:GLY13 4.1 0.0 1.0 HA2 T:GLY156 4.2 0.0 1.0 HE22 T:GLN137 4.2 0.0 1.0 CG T:GLN137 4.3 0.0 1.0 NE2 T:GLN137 4.3 0.0 1.0 HG3 T:LYS336 4.4 0.0 1.0 CA T:GLY156 4.4 0.0 1.0 HA T:ASN12 4.4 0.0 1.0 C T:ASP11 4.4 0.0 1.0 HZ1 T:LYS18 4.5 0.0 1.0 O5' T:ADP400 4.5 0.0 1.0 HB3 T:ASP11 4.5 0.0 1.0 CG2 T:THR106 4.6 0.0 1.0 N T:ASN12 4.6 0.0 1.0 N T:GLY13 4.6 0.0 1.0 HA3 T:GLY13 4.6 0.0 1.0 HE2 T:LYS18 4.6 0.0 1.0 HB2 T:ASP11 4.6 0.0 1.0 O T:ASP11 4.7 0.0 1.0 CA T:ASP11 4.7 0.0 1.0 HA T:ASP11 4.7 0.0 1.0 HG2 T:GLN137 4.8 0.0 1.0 H T:GLY302 4.9 0.0 1.0 H T:ASN12 4.9 0.0 1.0 HG22 T:THR106 4.9 0.0 1.0 N T:ASP157 4.9 0.0 1.0 CE T:LYS18 4.9 0.0 1.0 HB3 T:ALA108 5.0 0.0 1.0 CA T:ASN12 5.0 0.0 1.0

A.Narita, T.Oda, Y.Maeda. Structural Basis For the Slow Dynamics of the Actin Filament Pointed End. Embo J. V. 30 1230 2011.
ISSN: ISSN 0261-4189
PubMed: 21378753
DOI: 10.1038/EMBOJ.2011.48