Calcium in PDB 2yab: Crystal Structure of the Autoinhibited Form of Mouse DAPK2 in Complex with Amp

All present enzymatic activity of Crystal Structure of the Autoinhibited Form of Mouse DAPK2 in Complex with Amp:
2.7.11.1;

The structure of Crystal Structure of the Autoinhibited Form of Mouse DAPK2 in Complex with Amp, PDB code: 2yab was solved by A.K.Patel, P.Kursula, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.69 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.140, 85.370, 123.990, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 21.5

The binding sites of Calcium atom in the Crystal Structure of the Autoinhibited Form of Mouse DAPK2 in Complex with Amp (pdb code 2yab). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Autoinhibited Form of Mouse DAPK2 in Complex with Amp, PDB code: 2yab:

Calcium binding site 1 out of 1 in the Crystal Structure of the Autoinhibited Form of Mouse DAPK2 in Complex with Amp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Autoinhibited Form of Mouse DAPK2 in Complex with Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1304 b:35.7 occ:1.00 O A:HOH2222 2.5 19.0 1.0 O A:ASN190 2.5 15.4 1.0 O B:HOH2232 2.6 21.9 1.0 O A:HOH2225 2.6 20.0 1.0 O B:ASN190 2.6 20.4 1.0 O B:HOH2226 2.6 20.2 1.0 HB3 A:ASN190 3.4 18.2 1.0 HB3 B:ASN190 3.4 15.8 1.0 C A:ASN190 3.5 17.3 1.0 C B:ASN190 3.6 22.3 1.0 HA A:ASN190 3.6 21.5 1.0 HA B:ASN190 3.7 20.8 1.0 HB3 A:TYR191 3.9 19.2 1.0 O A:HOH2069 3.9 41.1 1.0 O A:HOH2076 3.9 45.3 1.0 CA A:ASN190 4.0 17.9 1.0 HB3 B:TYR191 4.0 16.2 1.0 CA B:ASN190 4.0 17.3 1.0 CB A:ASN190 4.1 15.1 1.0 HG3 A:GLU192 4.1 21.5 1.0 CB B:ASN190 4.1 13.1 1.0 HG3 B:GLU192 4.2 25.0 1.0 O A:HOH2078 4.4 44.8 1.0 O A:TYR191 4.5 18.5 1.0 OD1 A:ASN190 4.5 17.5 1.0 OD1 B:ASN190 4.6 22.4 1.0 HG2 A:GLU192 4.6 21.5 1.0 O B:TYR191 4.6 21.3 1.0 N A:TYR191 4.6 14.0 1.0 OE2 A:GLU192 4.6 22.4 1.0 N B:TYR191 4.7 16.7 1.0 OE2 B:GLU192 4.7 28.4 1.0 CG A:ASN190 4.7 18.5 1.0 CG A:GLU192 4.7 17.9 1.0 CB A:TYR191 4.7 16.0 1.0 CG B:ASN190 4.8 21.1 1.0 HG2 B:GLU192 4.8 25.0 1.0 CB B:TYR191 4.8 13.5 1.0 C A:TYR191 4.8 21.9 1.0 HB2 A:ASN190 4.8 18.2 1.0 CG B:GLU192 4.9 20.8 1.0 HB2 B:ASN190 4.9 15.8 1.0 C B:TYR191 5.0 21.6 1.0 CA A:TYR191 5.0 14.2 1.0

A.K.Patel, R.P.Yadav, V.Majava, I.Kursula, P.Kursula. Structure of the Dimeric Autoinhibited Conformation of DAPK2, A Pro-Apoptotic Protein Kinase. J.Mol.Biol. V. 409 369 2011.
ISSN: ISSN 0022-2836
PubMed: 21497605
DOI: 10.1016/J.JMB.2011.03.065