Calcium in PDB 2yfz: CBM62 From Clostridium Thermocellum XYL5A

The structure of CBM62 From Clostridium Thermocellum XYL5A, PDB code: 2yfz was solved by C.Y.Montanier, M.A.S.Correia, J.E.Flint, Y.Zhu, A.Basle, L.S.Mckee, J.A.M.Prates, S.J.Polizzi, P.M.Coutinho, B.Henrissat, C.M.G.A.Fontes, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.91 / 1.80
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	191.801, 191.801, 191.801, 90.00, 90.00, 90.00
R / Rfree (%)	16.366 / 18.032

The binding sites of Calcium atom in the CBM62 From Clostridium Thermocellum XYL5A (pdb code 2yfz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the CBM62 From Clostridium Thermocellum XYL5A, PDB code: 2yfz:

Calcium binding site 1 out of 1 in the CBM62 From Clostridium Thermocellum XYL5A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CBM62 From Clostridium Thermocellum XYL5A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1141 b:13.2 occ:1.00 O A:LYS25 2.3 9.8 1.0 O A:ASP30 2.4 8.0 1.0 O A:ALA130 2.4 7.6 1.0 OG1 A:THR33 2.5 10.0 1.0 OD1 A:ASP28 2.5 8.7 1.0 OE1 A:GLU131 2.5 15.9 1.0 O A:THR33 2.7 10.8 1.0 C A:THR33 3.5 10.2 1.0 CG A:ASP28 3.5 9.7 1.0 C A:ASP30 3.5 9.3 1.0 C A:LYS25 3.5 9.8 1.0 C A:ALA130 3.6 7.6 1.0 CB A:THR33 3.7 10.0 1.0 CD A:GLU131 3.7 9.9 1.0 OD2 A:ASP28 3.8 10.8 1.0 CA A:THR33 4.0 9.5 1.0 N A:ASP30 4.0 9.7 1.0 N A:THR33 4.0 9.6 1.0 CA A:ASP30 4.2 8.7 1.0 CA A:ALA26 4.3 9.2 1.0 N A:ALA26 4.3 9.2 1.0 CA A:ALA130 4.4 7.2 1.0 CB A:ASP30 4.4 9.8 1.0 N A:PHE34 4.4 9.3 1.0 CA A:LYS25 4.5 9.4 1.0 OE2 A:GLU131 4.5 15.4 1.0 N A:GLU131 4.5 6.9 1.0 CB A:GLU131 4.5 8.0 1.0 N A:LEU31 4.5 8.1 1.0 N A:ASP28 4.5 9.3 1.0 CA A:GLU131 4.5 8.2 1.0 C A:ALA26 4.6 9.3 1.0 CA A:LEU31 4.7 9.0 1.0 CB A:ALA130 4.7 7.8 1.0 CB A:LYS25 4.7 8.6 1.0 CG A:GLU131 4.7 11.0 1.0 CB A:ASP28 4.8 10.0 1.0 N A:GLY29 4.8 10.2 1.0 CA A:PHE34 4.8 8.7 1.0 CG2 A:THR33 4.9 11.4 1.0 N A:PHE27 4.9 9.2 1.0 C A:LEU31 4.9 9.3 1.0

C.Y.Montanier, M.A.S.Correia, J.E.Flint, Y.Zhu, A.Basle, L.S.Mckee, J.A.M.Prates, S.J.Polizzi, P.M.Coutinho, R.J.Lewis, B.Henrissat, C.M.G.A.Fontes, H.J.Gilbert. A Novel, Noncatalytic Carbohydrate-Binding Module Displays Specificity For Galactose-Containing Polysaccharides Through Calcium-Mediated Oligomerization. J.Biol.Chem. V. 286 22499 2011.
ISSN: ISSN 0021-9258
PubMed: 21454512
DOI: 10.1074/JBC.M110.217372