Calcium in PDB 2z8z: Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
Enzymatic activity of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
All present enzymatic activity of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase:
3.1.1.3;
Protein crystallography data
The structure of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase, PDB code: 2z8z
was solved by
C.Angkawidjaja,
D.J.You,
H.Matsumura,
Y.Koga,
K.Takano,
S.Kanaya,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
32.12 /
1.80
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.879,
84.404,
87.012,
90.00,
96.50,
90.00
|
|
R / Rfree (%)
|
17.4 /
20.5
|
Other elements in 2z8z:
The structure of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
(pdb code 2z8z). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the
Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase, PDB code: 2z8z:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 1 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca618
b:19.8
occ:1.00
|
OE2
|
A:GLU253
|
2.3
|
20.1
|
1.0
|
|
ND2
|
A:ASN284
|
2.4
|
18.2
|
1.0
|
|
O
|
A:HOH638
|
2.4
|
16.5
|
1.0
|
|
OD1
|
A:ASP275
|
2.5
|
17.0
|
1.0
|
|
O
|
A:ASP283
|
2.5
|
16.6
|
1.0
|
|
O
|
A:HOH666
|
2.5
|
18.9
|
1.0
|
|
OD2
|
A:ASP275
|
2.5
|
20.4
|
1.0
|
|
CG
|
A:ASP275
|
2.8
|
21.4
|
1.0
|
|
CD
|
A:GLU253
|
3.3
|
23.0
|
1.0
|
|
C
|
A:ASP283
|
3.5
|
18.0
|
1.0
|
|
CG
|
A:ASN284
|
3.6
|
21.0
|
1.0
|
|
CG
|
A:GLU253
|
3.7
|
23.5
|
1.0
|
|
CA
|
A:ASN284
|
4.0
|
17.3
|
1.0
|
|
O
|
A:ASP275
|
4.2
|
20.5
|
1.0
|
|
N
|
A:ASN284
|
4.2
|
18.5
|
1.0
|
|
CB
|
A:ASN284
|
4.3
|
17.5
|
1.0
|
|
CB
|
A:ASP275
|
4.3
|
20.6
|
1.0
|
|
CB
|
A:ASP283
|
4.4
|
19.4
|
1.0
|
|
O
|
A:HOH1098
|
4.4
|
39.1
|
1.0
|
|
OE1
|
A:GLU253
|
4.4
|
24.0
|
1.0
|
|
NE2
|
A:HIS365
|
4.4
|
17.1
|
1.0
|
|
OD1
|
A:ASN284
|
4.4
|
25.6
|
1.0
|
|
CD2
|
A:HIS365
|
4.4
|
20.2
|
1.0
|
|
NH1
|
A:ARG259
|
4.5
|
18.1
|
1.0
|
|
CA
|
A:ASP283
|
4.5
|
18.7
|
1.0
|
|
CB
|
A:ALA362
|
4.5
|
21.5
|
1.0
|
|
CB
|
A:GLU253
|
4.6
|
21.0
|
1.0
|
|
N
|
A:GLU363
|
4.7
|
23.8
|
1.0
|
|
O
|
A:GLU363
|
4.8
|
21.6
|
1.0
|
|
NH2
|
A:ARG259
|
4.8
|
20.6
|
1.0
|
|
Calcium binding site 2 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 2 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca619
b:18.1
occ:1.00
|
OD2
|
A:ASP283
|
2.3
|
20.0
|
1.0
|
|
O
|
A:HOH690
|
2.3
|
20.6
|
1.0
|
|
O
|
A:ALA281
|
2.4
|
17.9
|
1.0
|
|
O
|
A:HOH656
|
2.4
|
18.9
|
1.0
|
|
OD2
|
A:ASP337
|
2.5
|
19.0
|
1.0
|
|
O
|
A:LYS278
|
2.5
|
18.3
|
1.0
|
|
OD1
|
A:ASP337
|
2.5
|
17.2
|
1.0
|
|
CG
|
A:ASP337
|
2.8
|
19.1
|
1.0
|
|
CG
|
A:ASP283
|
3.3
|
20.1
|
1.0
|
|
C
|
A:LYS278
|
3.5
|
20.9
|
1.0
|
|
C
|
A:ALA281
|
3.6
|
16.8
|
1.0
|
|
N
|
A:LYS278
|
4.0
|
21.2
|
1.0
|
|
CB
|
A:ASP283
|
4.1
|
19.4
|
1.0
|
|
OD1
|
A:ASP283
|
4.1
|
22.4
|
1.0
|
|
N
|
A:ALA281
|
4.2
|
16.6
|
1.0
|
|
N
|
A:ASP283
|
4.3
|
17.7
|
1.0
|
|
CB
|
A:ASP337
|
4.3
|
18.4
|
1.0
|
|
CA
|
A:ALA281
|
4.4
|
16.8
|
1.0
|
|
CA
|
A:LYS278
|
4.4
|
20.5
|
1.0
|
|
O
|
A:GLU279
|
4.4
|
20.5
|
1.0
|
|
N
|
A:GLU279
|
4.4
|
19.7
|
1.0
|
|
CA
|
A:GLU279
|
4.5
|
21.4
|
1.0
|
|
C
|
A:GLU279
|
4.5
|
20.2
|
1.0
|
|
N
|
A:THR282
|
4.6
|
17.1
|
1.0
|
|
O
|
A:HOH1059
|
4.6
|
30.5
|
1.0
|
|
CB
|
A:ALA281
|
4.7
|
16.7
|
1.0
|
|
O
|
A:HOH953
|
4.7
|
29.2
|
1.0
|
|
CG
|
A:LYS336
|
4.8
|
17.2
|
1.0
|
|
CA
|
A:THR282
|
4.8
|
16.9
|
1.0
|
|
CA
|
A:ASP283
|
4.8
|
18.7
|
1.0
|
|
C
|
A:THR282
|
4.9
|
18.3
|
1.0
|
|
CD
|
A:LYS336
|
5.0
|
20.0
|
1.0
|
|
CE
|
A:LYS336
|
5.0
|
22.7
|
1.0
|
|
C
|
A:PRO277
|
5.0
|
23.0
|
1.0
|
|
Calcium binding site 3 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 3 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca620
b:20.6
occ:1.00
|
OD2
|
A:ASP378
|
2.2
|
18.8
|
1.0
|
|
O
|
A:ALA393
|
2.2
|
19.7
|
1.0
|
|
O
|
A:SER376
|
2.3
|
22.0
|
1.0
|
|
O
|
A:GLY391
|
2.3
|
17.3
|
1.0
|
|
O
|
A:SER374
|
2.4
|
19.8
|
1.0
|
|
OD1
|
A:ASP396
|
2.5
|
22.5
|
1.0
|
|
OD2
|
A:ASP396
|
3.0
|
20.3
|
1.0
|
|
CG
|
A:ASP396
|
3.1
|
19.3
|
1.0
|
|
CG
|
A:ASP378
|
3.3
|
21.2
|
1.0
|
|
C
|
A:GLY391
|
3.5
|
18.0
|
1.0
|
|
C
|
A:SER376
|
3.5
|
24.0
|
1.0
|
|
C
|
A:ALA393
|
3.5
|
20.1
|
1.0
|
|
C
|
A:SER374
|
3.5
|
20.2
|
1.0
|
|
N
|
A:SER376
|
3.9
|
23.9
|
1.0
|
|
O
|
A:ARG392
|
4.0
|
19.4
|
1.0
|
|
C
|
A:ARG392
|
4.0
|
19.5
|
1.0
|
|
N
|
A:SER374
|
4.1
|
18.5
|
1.0
|
|
CB
|
A:ASP378
|
4.1
|
21.6
|
1.0
|
|
C
|
A:ASP375
|
4.1
|
22.9
|
1.0
|
|
N
|
A:ASP378
|
4.1
|
21.6
|
1.0
|
|
OD1
|
A:ASP378
|
4.2
|
22.4
|
1.0
|
|
N
|
A:ALA393
|
4.2
|
20.1
|
1.0
|
|
CA
|
A:GLY391
|
4.3
|
19.2
|
1.0
|
|
CA
|
A:GLY394
|
4.3
|
20.7
|
1.0
|
|
OG
|
A:SER374
|
4.3
|
18.8
|
1.0
|
|
CA
|
A:SER376
|
4.3
|
24.5
|
1.0
|
|
CA
|
A:ASP375
|
4.4
|
22.2
|
1.0
|
|
N
|
A:GLY394
|
4.4
|
20.2
|
1.0
|
|
N
|
A:ASP375
|
4.4
|
20.8
|
1.0
|
|
CA
|
A:SER374
|
4.4
|
19.0
|
1.0
|
|
N
|
A:ARG392
|
4.4
|
16.3
|
1.0
|
|
N
|
A:ASN377
|
4.5
|
22.9
|
1.0
|
|
CB
|
A:ASP396
|
4.5
|
19.9
|
1.0
|
|
CA
|
A:ALA393
|
4.5
|
20.8
|
1.0
|
|
C
|
A:GLY394
|
4.5
|
21.4
|
1.0
|
|
CA
|
A:ARG392
|
4.5
|
18.8
|
1.0
|
|
O
|
A:GLY394
|
4.6
|
20.2
|
1.0
|
|
CB
|
A:ARG392
|
4.6
|
18.2
|
1.0
|
|
CA
|
A:ASN377
|
4.6
|
22.9
|
1.0
|
|
CA
|
A:CA622
|
4.6
|
20.7
|
1.0
|
|
O
|
A:ASP375
|
4.7
|
22.4
|
1.0
|
|
C
|
A:ASN377
|
4.7
|
23.3
|
1.0
|
|
C
|
A:GLY373
|
4.8
|
18.1
|
1.0
|
|
CA
|
A:ASP378
|
4.8
|
21.2
|
1.0
|
|
CA
|
A:GLY373
|
5.0
|
18.8
|
1.0
|
|
CB
|
A:SER374
|
5.0
|
19.4
|
1.0
|
|
Calcium binding site 4 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 4 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca621
b:20.1
occ:1.00
|
O
|
A:GLY385
|
2.2
|
19.3
|
1.0
|
|
OD2
|
A:ASP387
|
2.3
|
20.2
|
1.0
|
|
OD1
|
A:ASN405
|
2.4
|
17.6
|
1.0
|
|
O
|
A:GLY402
|
2.4
|
22.9
|
1.0
|
|
OD1
|
A:ASP400
|
2.4
|
20.0
|
1.0
|
|
O
|
A:GLY383
|
2.5
|
21.2
|
1.0
|
|
OD2
|
A:ASP400
|
2.6
|
17.9
|
1.0
|
|
CG
|
A:ASP400
|
2.9
|
22.0
|
1.0
|
|
CG
|
A:ASN405
|
3.3
|
18.6
|
1.0
|
|
CG
|
A:ASP387
|
3.3
|
20.5
|
1.0
|
|
C
|
A:GLY385
|
3.4
|
19.6
|
1.0
|
|
C
|
A:GLY383
|
3.5
|
22.0
|
1.0
|
|
ND2
|
A:ASN405
|
3.6
|
18.3
|
1.0
|
|
C
|
A:GLY402
|
3.6
|
22.7
|
1.0
|
|
CB
|
A:ASP387
|
3.9
|
19.3
|
1.0
|
|
N
|
A:GLY402
|
3.9
|
23.7
|
1.0
|
|
N
|
A:ASP387
|
4.1
|
16.9
|
1.0
|
|
N
|
A:GLY383
|
4.1
|
21.6
|
1.0
|
|
N
|
A:GLY385
|
4.2
|
19.8
|
1.0
|
|
O
|
A:HOH653
|
4.3
|
25.9
|
1.0
|
|
C
|
A:SER384
|
4.3
|
20.3
|
1.0
|
|
N
|
A:ASN386
|
4.3
|
19.2
|
1.0
|
|
CA
|
A:ASN386
|
4.3
|
18.4
|
1.0
|
|
CA
|
A:GLY402
|
4.3
|
23.2
|
1.0
|
|
N
|
A:SER384
|
4.3
|
22.2
|
1.0
|
|
OD1
|
A:ASP387
|
4.4
|
21.2
|
1.0
|
|
N
|
A:GLY401
|
4.4
|
23.4
|
1.0
|
|
C
|
A:ASN386
|
4.4
|
17.9
|
1.0
|
|
CB
|
A:ASP400
|
4.4
|
20.8
|
1.0
|
|
C
|
A:GLY382
|
4.4
|
21.6
|
1.0
|
|
CA
|
A:GLY383
|
4.4
|
22.4
|
1.0
|
|
CA
|
A:SER384
|
4.4
|
22.3
|
1.0
|
|
CA
|
A:GLY385
|
4.4
|
19.3
|
1.0
|
|
N
|
A:GLY403
|
4.6
|
21.9
|
1.0
|
|
CA
|
A:ASP387
|
4.6
|
18.1
|
1.0
|
|
CB
|
A:ASN405
|
4.6
|
19.2
|
1.0
|
|
O
|
A:SER384
|
4.7
|
21.5
|
1.0
|
|
CA
|
A:GLY403
|
4.7
|
22.0
|
1.0
|
|
C
|
A:GLY401
|
4.7
|
25.1
|
1.0
|
|
O
|
A:GLY382
|
4.9
|
22.6
|
1.0
|
|
CA
|
A:GLY382
|
4.9
|
21.5
|
1.0
|
|
C
|
A:GLY403
|
5.0
|
20.3
|
1.0
|
|
Calcium binding site 5 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 5 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca622
b:20.7
occ:1.00
|
OD2
|
A:ASP396
|
2.3
|
20.3
|
1.0
|
|
O
|
A:ALA411
|
2.3
|
24.2
|
1.0
|
|
O
|
A:GLY394
|
2.3
|
20.2
|
1.0
|
|
O
|
A:ARG392
|
2.4
|
19.4
|
1.0
|
|
O
|
A:GLY409
|
2.4
|
22.0
|
1.0
|
|
OD1
|
A:ASN414
|
2.5
|
20.5
|
1.0
|
|
CG
|
A:ASN414
|
3.4
|
23.4
|
1.0
|
|
CG
|
A:ASP396
|
3.4
|
19.3
|
1.0
|
|
C
|
A:ALA411
|
3.5
|
24.6
|
1.0
|
|
C
|
A:GLY394
|
3.5
|
21.4
|
1.0
|
|
C
|
A:ARG392
|
3.5
|
19.5
|
1.0
|
|
C
|
A:GLY409
|
3.6
|
20.0
|
1.0
|
|
ND2
|
A:ASN414
|
3.6
|
21.2
|
1.0
|
|
C
|
A:ALA393
|
3.7
|
20.1
|
1.0
|
|
O
|
A:ALA393
|
3.8
|
19.7
|
1.0
|
|
C
|
A:GLY410
|
3.9
|
24.0
|
1.0
|
|
N
|
A:GLY394
|
4.0
|
20.2
|
1.0
|
|
CA
|
A:ALA393
|
4.0
|
20.8
|
1.0
|
|
N
|
A:ALA411
|
4.1
|
23.7
|
1.0
|
|
CB
|
A:ASP396
|
4.1
|
19.9
|
1.0
|
|
O
|
A:GLY410
|
4.2
|
24.3
|
1.0
|
|
N
|
A:ASP396
|
4.2
|
21.0
|
1.0
|
|
CA
|
A:GLY410
|
4.2
|
22.4
|
1.0
|
|
C
|
A:GLY391
|
4.2
|
18.0
|
1.0
|
|
N
|
A:ALA393
|
4.3
|
20.1
|
1.0
|
|
OD1
|
A:ASP396
|
4.3
|
22.5
|
1.0
|
|
CA
|
A:GLY394
|
4.3
|
20.7
|
1.0
|
|
N
|
A:GLY410
|
4.4
|
21.4
|
1.0
|
|
CA
|
A:ALA411
|
4.4
|
25.0
|
1.0
|
|
O
|
A:GLY391
|
4.4
|
17.3
|
1.0
|
|
N
|
A:GLY412
|
4.4
|
25.3
|
1.0
|
|
CA
|
A:GLY412
|
4.4
|
25.9
|
1.0
|
|
N
|
A:ARG392
|
4.5
|
16.3
|
1.0
|
|
N
|
A:ASN395
|
4.5
|
20.8
|
1.0
|
|
CA
|
A:GLY391
|
4.6
|
19.2
|
1.0
|
|
CA
|
A:CA620
|
4.6
|
20.6
|
1.0
|
|
CA
|
A:GLY409
|
4.6
|
20.1
|
1.0
|
|
CA
|
A:ARG392
|
4.6
|
18.8
|
1.0
|
|
CA
|
A:ASN395
|
4.7
|
22.4
|
1.0
|
|
CB
|
A:ASN414
|
4.7
|
23.9
|
1.0
|
|
C
|
A:ASN395
|
4.8
|
22.2
|
1.0
|
|
CA
|
A:ASP396
|
4.8
|
20.0
|
1.0
|
|
C
|
A:GLY412
|
5.0
|
25.8
|
1.0
|
|
Calcium binding site 6 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 6 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca623
b:20.9
occ:1.00
|
O
|
A:GLY511
|
2.2
|
20.6
|
1.0
|
|
O
|
A:THR494
|
2.3
|
25.2
|
1.0
|
|
O
|
A:GLY496
|
2.3
|
23.0
|
1.0
|
|
O
|
A:ASP513
|
2.3
|
22.5
|
1.0
|
|
OD2
|
A:ASP498
|
2.4
|
22.4
|
1.0
|
|
OD1
|
A:ASP516
|
2.4
|
19.0
|
1.0
|
|
OD2
|
A:ASP516
|
2.7
|
16.8
|
1.0
|
|
CG
|
A:ASP516
|
2.9
|
19.3
|
1.0
|
|
C
|
A:GLY511
|
3.4
|
21.8
|
1.0
|
|
CG
|
A:ASP498
|
3.4
|
25.5
|
1.0
|
|
C
|
A:THR494
|
3.5
|
26.0
|
1.0
|
|
C
|
A:ASP513
|
3.5
|
22.7
|
1.0
|
|
C
|
A:GLY496
|
3.5
|
23.4
|
1.0
|
|
C
|
A:LEU512
|
3.9
|
23.8
|
1.0
|
|
O
|
A:LEU512
|
3.9
|
22.4
|
1.0
|
|
N
|
A:THR494
|
4.0
|
25.7
|
1.0
|
|
N
|
A:GLY496
|
4.1
|
25.2
|
1.0
|
|
N
|
A:ASP513
|
4.2
|
23.0
|
1.0
|
|
OD1
|
A:ASP498
|
4.2
|
25.8
|
1.0
|
|
N
|
A:ASP498
|
4.2
|
23.8
|
1.0
|
|
CA
|
A:GLY511
|
4.2
|
20.2
|
1.0
|
|
C
|
A:ASN495
|
4.3
|
25.6
|
1.0
|
|
CB
|
A:ASP498
|
4.3
|
23.2
|
1.0
|
|
CB
|
A:ASP516
|
4.3
|
18.7
|
1.0
|
|
CA
|
A:THR494
|
4.3
|
26.2
|
1.0
|
|
N
|
A:ASN495
|
4.4
|
26.7
|
1.0
|
|
N
|
A:LEU512
|
4.4
|
22.8
|
1.0
|
|
CA
|
A:ASN495
|
4.4
|
26.9
|
1.0
|
|
OG1
|
A:THR494
|
4.4
|
23.4
|
1.0
|
|
N
|
A:GLY514
|
4.4
|
20.6
|
1.0
|
|
O
|
A:GLY514
|
4.4
|
20.6
|
1.0
|
|
N
|
A:ALA497
|
4.5
|
24.2
|
1.0
|
|
CA
|
A:GLY496
|
4.5
|
24.4
|
1.0
|
|
CA
|
A:ASP513
|
4.5
|
24.0
|
1.0
|
|
CB
|
A:LEU512
|
4.5
|
23.5
|
1.0
|
|
CA
|
A:LEU512
|
4.5
|
23.5
|
1.0
|
|
CA
|
A:CA625
|
4.5
|
19.3
|
1.0
|
|
CA
|
A:GLY514
|
4.5
|
20.8
|
1.0
|
|
CA
|
A:ALA497
|
4.6
|
23.8
|
1.0
|
|
C
|
A:GLY514
|
4.6
|
19.3
|
1.0
|
|
C
|
A:ALA497
|
4.7
|
25.6
|
1.0
|
|
O
|
A:ASN495
|
4.9
|
23.9
|
1.0
|
|
CA
|
A:ASP498
|
4.9
|
22.8
|
1.0
|
|
C
|
A:GLY493
|
4.9
|
25.6
|
1.0
|
|
Calcium binding site 7 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 7 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca624
b:44.3
occ:1.00
|
OD1
|
A:ASP525
|
2.7
|
19.6
|
1.0
|
|
O
|
A:HIS503
|
2.8
|
28.6
|
1.0
|
|
N
|
A:GLY523
|
3.0
|
23.1
|
1.0
|
|
CA
|
A:GLY521
|
3.1
|
22.8
|
1.0
|
|
C
|
A:GLY521
|
3.1
|
23.7
|
1.0
|
|
OD2
|
A:ASP525
|
3.2
|
21.5
|
1.0
|
|
N
|
A:GLY521
|
3.2
|
22.0
|
1.0
|
|
CA
|
A:GLY523
|
3.3
|
22.7
|
1.0
|
|
CG
|
A:ASP525
|
3.4
|
22.5
|
1.0
|
|
O
|
A:GLY521
|
3.4
|
21.2
|
1.0
|
|
O
|
A:GLY523
|
3.5
|
21.9
|
1.0
|
|
CA
|
A:GLY506
|
3.6
|
22.4
|
1.0
|
|
C
|
A:GLY523
|
3.6
|
21.9
|
1.0
|
|
N
|
A:VAL522
|
3.6
|
24.3
|
1.0
|
|
N
|
A:GLY506
|
3.7
|
23.6
|
1.0
|
|
O
|
A:ALA504
|
3.8
|
28.2
|
1.0
|
|
CB
|
A:ALA502
|
3.8
|
20.0
|
1.0
|
|
C
|
A:HIS503
|
3.8
|
28.4
|
1.0
|
|
C
|
A:ALA504
|
4.0
|
26.7
|
1.0
|
|
CA
|
A:ALA504
|
4.1
|
27.4
|
1.0
|
|
C
|
A:VAL522
|
4.1
|
23.2
|
1.0
|
|
CA
|
A:CA626
|
4.3
|
19.4
|
1.0
|
|
N
|
A:ALA504
|
4.4
|
28.2
|
1.0
|
|
CA
|
A:VAL522
|
4.5
|
23.2
|
1.0
|
|
N
|
A:ASN524
|
4.5
|
23.3
|
1.0
|
|
C
|
A:GLY520
|
4.5
|
19.1
|
1.0
|
|
C
|
A:GLY506
|
4.6
|
23.0
|
1.0
|
|
O
|
A:HOH692
|
4.7
|
22.4
|
1.0
|
|
N
|
A:HIS503
|
4.7
|
24.6
|
1.0
|
|
C
|
A:GLY505
|
4.7
|
24.5
|
1.0
|
|
C
|
A:ALA502
|
4.7
|
22.6
|
1.0
|
|
N
|
A:GLY505
|
4.7
|
24.5
|
1.0
|
|
N
|
A:ASP507
|
4.8
|
20.2
|
1.0
|
|
CB
|
A:ASP525
|
4.8
|
20.8
|
1.0
|
|
CA
|
A:ALA502
|
5.0
|
21.2
|
1.0
|
|
O
|
A:ALA502
|
5.0
|
23.7
|
1.0
|
|
CA
|
A:HIS503
|
5.0
|
27.6
|
1.0
|
|
Calcium binding site 8 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 8 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca625
b:19.3
occ:1.00
|
O
|
A:LEU512
|
2.3
|
22.4
|
1.0
|
|
O
|
A:GLY514
|
2.3
|
20.6
|
1.0
|
|
O
|
A:ALA531
|
2.3
|
19.9
|
1.0
|
|
O
|
A:GLY529
|
2.4
|
19.0
|
1.0
|
|
OD1
|
A:ASP534
|
2.4
|
18.8
|
1.0
|
|
OD2
|
A:ASP516
|
2.4
|
16.8
|
1.0
|
|
OD2
|
A:ASP534
|
3.0
|
16.0
|
1.0
|
|
CG
|
A:ASP534
|
3.0
|
18.5
|
1.0
|
|
CG
|
A:ASP516
|
3.4
|
19.3
|
1.0
|
|
C
|
A:GLY529
|
3.5
|
19.3
|
1.0
|
|
C
|
A:ALA531
|
3.6
|
20.3
|
1.0
|
|
C
|
A:GLY514
|
3.6
|
19.3
|
1.0
|
|
C
|
A:LEU512
|
3.6
|
23.8
|
1.0
|
|
C
|
A:ASP513
|
3.8
|
22.7
|
1.0
|
|
N
|
A:GLY514
|
3.9
|
20.6
|
1.0
|
|
O
|
A:ASP513
|
3.9
|
22.5
|
1.0
|
|
C
|
A:GLY530
|
4.0
|
19.9
|
1.0
|
|
CB
|
A:ASP516
|
4.1
|
18.7
|
1.0
|
|
O
|
A:GLY530
|
4.1
|
20.7
|
1.0
|
|
CA
|
A:ASP513
|
4.2
|
24.0
|
1.0
|
|
C
|
A:GLY511
|
4.2
|
21.8
|
1.0
|
|
N
|
A:ASP516
|
4.2
|
20.0
|
1.0
|
|
N
|
A:ALA531
|
4.2
|
21.2
|
1.0
|
|
O
|
A:GLY511
|
4.3
|
20.6
|
1.0
|
|
CA
|
A:GLY530
|
4.3
|
20.1
|
1.0
|
|
N
|
A:GLY530
|
4.3
|
19.6
|
1.0
|
|
CA
|
A:GLY532
|
4.4
|
19.6
|
1.0
|
|
N
|
A:ASP513
|
4.4
|
23.0
|
1.0
|
|
CA
|
A:GLY514
|
4.4
|
20.8
|
1.0
|
|
N
|
A:GLY532
|
4.4
|
19.4
|
1.0
|
|
OD1
|
A:ASP516
|
4.4
|
19.0
|
1.0
|
|
N
|
A:LEU512
|
4.4
|
22.8
|
1.0
|
|
CA
|
A:GLY529
|
4.5
|
19.2
|
1.0
|
|
CB
|
A:ASP534
|
4.5
|
17.1
|
1.0
|
|
CA
|
A:CA623
|
4.5
|
20.9
|
1.0
|
|
CA
|
A:ALA531
|
4.5
|
21.1
|
1.0
|
|
N
|
A:ASN515
|
4.6
|
20.1
|
1.0
|
|
CA
|
A:GLY511
|
4.6
|
20.2
|
1.0
|
|
C
|
A:GLY532
|
4.6
|
18.9
|
1.0
|
|
CA
|
A:LEU512
|
4.6
|
23.5
|
1.0
|
|
O
|
A:GLY532
|
4.7
|
17.9
|
1.0
|
|
CA
|
A:CA627
|
4.7
|
18.1
|
1.0
|
|
CA
|
A:ASN515
|
4.8
|
21.1
|
1.0
|
|
CA
|
A:ASP516
|
4.8
|
18.4
|
1.0
|
|
C
|
A:ASN515
|
4.9
|
21.5
|
1.0
|
|
Calcium binding site 9 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 9 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca626
b:19.4
occ:1.00
|
OD2
|
A:ASP525
|
2.3
|
21.5
|
1.0
|
|
O
|
A:GLY540
|
2.3
|
20.9
|
1.0
|
|
O
|
A:GLY521
|
2.4
|
21.2
|
1.0
|
|
O
|
A:SER538
|
2.4
|
19.3
|
1.0
|
|
O
|
A:GLY523
|
2.4
|
21.9
|
1.0
|
|
OD2
|
A:ASP543
|
2.5
|
20.0
|
1.0
|
|
OD1
|
A:ASP543
|
2.5
|
21.4
|
1.0
|
|
CG
|
A:ASP543
|
2.9
|
19.6
|
1.0
|
|
CG
|
A:ASP525
|
3.3
|
22.5
|
1.0
|
|
C
|
A:GLY540
|
3.5
|
20.7
|
1.0
|
|
C
|
A:GLY521
|
3.5
|
23.7
|
1.0
|
|
C
|
A:SER538
|
3.5
|
17.1
|
1.0
|
|
C
|
A:GLY523
|
3.6
|
21.9
|
1.0
|
|
N
|
A:GLY540
|
3.9
|
21.7
|
1.0
|
|
N
|
A:GLY521
|
3.9
|
22.0
|
1.0
|
|
OG
|
A:SER538
|
4.0
|
17.9
|
1.0
|
|
CB
|
A:ASP525
|
4.0
|
20.8
|
1.0
|
|
N
|
A:ASP525
|
4.2
|
22.4
|
1.0
|
|
C
|
A:GLY539
|
4.2
|
21.1
|
1.0
|
|
OD1
|
A:ASP525
|
4.3
|
19.6
|
1.0
|
|
N
|
A:GLY523
|
4.3
|
23.1
|
1.0
|
|
CA
|
A:GLY540
|
4.3
|
20.4
|
1.0
|
|
CA
|
A:GLY521
|
4.3
|
22.8
|
1.0
|
|
CA
|
A:CA624
|
4.3
|
44.3
|
1.0
|
|
C
|
A:VAL522
|
4.4
|
23.2
|
1.0
|
|
CB
|
A:ASP543
|
4.4
|
19.9
|
1.0
|
|
CA
|
A:SER538
|
4.4
|
16.9
|
1.0
|
|
N
|
A:GLY539
|
4.4
|
20.5
|
1.0
|
|
N
|
A:GLY541
|
4.4
|
20.0
|
1.0
|
|
N
|
A:VAL522
|
4.5
|
24.3
|
1.0
|
|
CA
|
A:GLY541
|
4.5
|
19.4
|
1.0
|
|
C
|
A:GLY520
|
4.5
|
19.1
|
1.0
|
|
CA
|
A:GLY539
|
4.6
|
20.5
|
1.0
|
|
CA
|
A:GLY523
|
4.6
|
22.7
|
1.0
|
|
N
|
A:ASN524
|
4.6
|
23.3
|
1.0
|
|
CA
|
A:GLY520
|
4.6
|
18.6
|
1.0
|
|
CA
|
A:VAL522
|
4.7
|
23.2
|
1.0
|
|
CA
|
A:ASN524
|
4.7
|
23.1
|
1.0
|
|
CA
|
A:ASP525
|
4.8
|
21.5
|
1.0
|
|
O
|
A:VAL522
|
4.8
|
23.2
|
1.0
|
|
CB
|
A:SER538
|
4.8
|
16.3
|
1.0
|
|
CE2
|
A:PHE527
|
4.9
|
20.1
|
1.0
|
|
O
|
A:GLY539
|
4.9
|
22.6
|
1.0
|
|
CZ
|
A:PHE527
|
4.9
|
18.4
|
1.0
|
|
C
|
A:ASN524
|
4.9
|
22.3
|
1.0
|
|
C
|
A:GLY541
|
4.9
|
21.2
|
1.0
|
|
Calcium binding site 10 out
of 11 in 2z8z
Go back to
Calcium Binding Sites List in 2z8z
Calcium binding site 10 out
of 11 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca627
b:18.1
occ:1.00
|
O
|
A:PHE551
|
2.2
|
18.9
|
1.0
|
|
O
|
A:GLY530
|
2.2
|
20.7
|
1.0
|
|
OD2
|
A:ASP534
|
2.3
|
16.0
|
1.0
|
|
O
|
A:GLY532
|
2.3
|
17.9
|
1.0
|
|
OD1
|
A:ASP554
|
2.4
|
21.4
|
1.0
|
|
O
|
A:HOH743
|
2.4
|
18.5
|
1.0
|
|
CG
|
A:ASP554
|
3.1
|
18.9
|
1.0
|
|
OD2
|
A:ASP554
|
3.1
|
22.3
|
1.0
|
|
C
|
A:PHE551
|
3.4
|
20.1
|
1.0
|
|
CG
|
A:ASP534
|
3.4
|
18.5
|
1.0
|
|
C
|
A:GLY532
|
3.5
|
18.9
|
1.0
|
|
C
|
A:GLY530
|
3.5
|
19.9
|
1.0
|
|
C
|
A:ALA531
|
4.0
|
20.3
|
1.0
|
|
CB
|
A:ASP534
|
4.1
|
17.1
|
1.0
|
|
O
|
A:ALA531
|
4.1
|
19.9
|
1.0
|
|
N
|
A:ASP534
|
4.1
|
17.9
|
1.0
|
|
N
|
A:GLY532
|
4.2
|
19.4
|
1.0
|
|
C
|
A:GLY529
|
4.2
|
19.3
|
1.0
|
|
N
|
A:GLY530
|
4.2
|
19.6
|
1.0
|
|
CA
|
A:PHE551
|
4.3
|
19.6
|
1.0
|
|
N
|
A:ASN533
|
4.4
|
19.7
|
1.0
|
|
CA
|
A:GLY532
|
4.4
|
19.6
|
1.0
|
|
N
|
A:GLY552
|
4.4
|
20.0
|
1.0
|
|
N
|
A:ALA531
|
4.4
|
21.2
|
1.0
|
|
OD1
|
A:ASP534
|
4.4
|
18.8
|
1.0
|
|
CA
|
A:ALA531
|
4.4
|
21.1
|
1.0
|
|
CA
|
A:GLY530
|
4.4
|
20.1
|
1.0
|
|
O
|
A:GLY529
|
4.4
|
19.0
|
1.0
|
|
CB
|
A:PHE551
|
4.5
|
19.2
|
1.0
|
|
CA
|
A:GLY552
|
4.5
|
21.3
|
1.0
|
|
CA
|
A:GLY529
|
4.5
|
19.2
|
1.0
|
|
CA
|
A:ASN533
|
4.6
|
19.3
|
1.0
|
|
CB
|
A:ASP554
|
4.6
|
18.0
|
1.0
|
|
CA
|
A:CA625
|
4.7
|
19.3
|
1.0
|
|
CA
|
A:ASP534
|
4.7
|
16.7
|
1.0
|
|
C
|
A:ASN533
|
4.8
|
19.4
|
1.0
|
|
O
|
A:HOH760
|
4.8
|
20.0
|
1.0
|
|
C
|
A:GLY552
|
4.9
|
20.2
|
1.0
|
|
CD1
|
A:PHE551
|
4.9
|
17.0
|
1.0
|
|
Reference:
C.Angkawidjaja,
D.J.You,
H.Matsumura,
K.Kuwahara,
Y.Koga,
K.Takano,
S.Kanaya.
Crystal Structure of A Family I.3 Lipase From Pseudomonas Sp. MIS38 in A Closed Conformation Febs Lett. V. 581 5060 2007.
ISSN: ISSN 0014-5793
PubMed: 17923123
DOI: 10.1016/J.FEBSLET.2007.09.048
Page generated: Fri Jul 12 19:57:12 2024
|
