Atomistry » Calcium » PDB 2z8x-2zp4 » 2ze0
Atomistry »
  Calcium »
    PDB 2z8x-2zp4 »
      2ze0 »

Calcium in PDB 2ze0: Alpha-Glucosidase Gsj

Enzymatic activity of Alpha-Glucosidase Gsj

All present enzymatic activity of Alpha-Glucosidase Gsj:
3.2.1.20;

Protein crystallography data

The structure of Alpha-Glucosidase Gsj, PDB code: 2ze0 was solved by T.Shirai, V.S.Hung, K.Morinaka, T.Kobayashi, S.Ito, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.829, 90.621, 72.285, 90.00, 109.40, 90.00
R / Rfree (%) 20.2 / 24.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Alpha-Glucosidase Gsj (pdb code 2ze0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Alpha-Glucosidase Gsj, PDB code: 2ze0:

Calcium binding site 1 out of 1 in 2ze0

Go back to Calcium Binding Sites List in 2ze0
Calcium binding site 1 out of 1 in the Alpha-Glucosidase Gsj


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Alpha-Glucosidase Gsj within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca552

b:28.2
occ:1.00
OD1 A:ASP29 2.3 21.9 1.0
OD1 A:ASP25 2.3 23.8 1.0
O A:ILE27 2.4 22.9 1.0
OD1 A:ASP21 2.4 21.0 1.0
O A:HOH875 2.4 28.5 1.0
OD1 A:ASN23 2.4 27.0 1.0
CG A:ASP25 3.2 25.8 1.0
CG A:ASP29 3.3 22.5 1.0
CG A:ASP21 3.3 25.5 1.0
CG A:ASN23 3.4 29.2 1.0
C A:ILE27 3.5 22.5 1.0
OD2 A:ASP25 3.6 26.4 1.0
CB A:ASP29 3.8 21.9 1.0
N A:ASN23 4.0 29.1 1.0
OD2 A:ASP21 4.0 23.8 1.0
ND2 A:ASN23 4.1 27.7 1.0
N A:ILE27 4.1 23.8 1.0
CA A:ILE27 4.2 23.2 1.0
OD2 A:ASP29 4.2 22.8 1.0
CB A:ASP21 4.2 26.2 1.0
CB A:ILE27 4.3 23.5 1.0
N A:ASP25 4.3 27.0 1.0
CA A:ASP21 4.3 26.5 1.0
N A:ALA22 4.4 28.3 1.0
O A:GLU74 4.4 29.9 1.0
C A:GLY28 4.4 21.1 1.0
CB A:ASP25 4.5 26.2 1.0
CB A:ASN23 4.5 29.3 1.0
N A:ASP29 4.5 21.3 1.0
CA A:ASN23 4.5 29.6 1.0
N A:GLY28 4.6 21.6 1.0
C A:ASP21 4.6 27.6 1.0
O A:GLY28 4.6 21.1 1.0
O A:HOH670 4.7 37.0 1.0
N A:GLY24 4.7 29.2 1.0
C A:ASN23 4.8 29.8 1.0
CA A:GLY28 4.8 21.4 1.0
CA A:ASP25 4.8 26.7 1.0
N A:GLY26 4.8 25.8 1.0
CA A:ASP29 4.8 21.8 1.0

Reference:

T.Shirai, V.S.Hung, K.Morinaka, T.Kobayashi, S.Ito. Crystal Structure of GH13 Alpha-Glucosidase Gsj From One of the Deepest Sea Bacteria Proteins V. 73 126 2008.
ISSN: ISSN 0887-3585
PubMed: 18398906
DOI: 10.1002/PROT.22044
Page generated: Fri Jul 12 20:00:26 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy