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Calcium in PDB 2zvd: Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation

Enzymatic activity of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation

All present enzymatic activity of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation, PDB code: 2zvd was solved by C.Angkawidjaja, H.Matsumura, Y.Koga, K.Takano, S.Kanaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.15
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.781, 104.781, 497.926, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 21

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation (pdb code 2zvd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 22 binding sites of Calcium where determined in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation, PDB code: 2zvd:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 22 in 2zvd

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Calcium binding site 1 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca618

b:12.4
occ:1.00
OE2 A:GLU253 2.3 13.4 1.0
O A:ASP283 2.4 12.4 1.0
OD1 A:ASN284 2.4 7.6 1.0
OD2 A:ASP275 2.4 11.7 1.0
O A:HOH633 2.5 16.7 1.0
OD1 A:ASP275 2.5 12.7 1.0
O A:HOH635 2.5 17.9 1.0
CG A:ASP275 2.8 12.9 1.0
CD A:GLU253 3.4 13.3 1.0
C A:ASP283 3.4 12.6 1.0
CG A:ASN284 3.5 9.9 1.0
CA A:ASN284 4.0 12.1 1.0
CG A:GLU253 4.0 14.7 1.0
CB A:GLU253 4.1 12.7 1.0
N A:ASN284 4.1 11.7 1.0
CB A:ASN284 4.2 10.5 1.0
O A:ASP275 4.2 12.8 1.0
CB A:ASP275 4.3 11.5 1.0
CB A:ASP283 4.3 13.7 1.0
NH1 A:ARG259 4.4 11.1 1.0
OE1 A:GLU253 4.4 15.3 1.0
O A:HOH637 4.4 15.8 1.0
CA A:ASP283 4.4 13.2 1.0
ND2 A:ASN284 4.6 11.4 1.0
CB A:ALA362 4.6 13.6 1.0
NE2 A:HIS365 4.6 12.9 1.0
CD2 A:HIS365 4.6 11.4 1.0
O A:HOH639 4.7 15.3 1.0
N A:GLU363 4.8 15.7 1.0
O A:GLU363 4.8 14.4 1.0
NH2 A:ARG259 4.9 10.7 1.0

Calcium binding site 2 out of 22 in 2zvd

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Calcium binding site 2 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca619

b:16.4
occ:1.00
OD2 A:ASP283 2.2 17.9 1.0
O A:ALA281 2.3 10.0 1.0
O A:LYS278 2.4 14.5 1.0
O A:HOH910 2.4 15.5 1.0
O A:HOH704 2.5 16.8 1.0
OD1 A:ASP337 2.5 11.7 1.0
OD2 A:ASP337 2.6 15.0 1.0
CG A:ASP337 2.9 15.6 1.0
CG A:ASP283 3.3 18.4 1.0
C A:LYS278 3.5 15.4 1.0
C A:ALA281 3.5 11.5 1.0
N A:LYS278 4.0 15.8 1.0
CB A:ASP283 4.1 13.7 1.0
N A:ALA281 4.2 13.2 1.0
OD1 A:ASP283 4.2 21.7 1.0
N A:ASP283 4.2 12.3 1.0
O A:GLU279 4.3 16.9 1.0
CA A:ALA281 4.3 11.4 1.0
N A:GLU279 4.3 16.0 1.0
CA A:LYS278 4.4 15.9 1.0
CA A:GLU279 4.4 17.7 1.0
CB A:ASP337 4.4 14.5 1.0
C A:GLU279 4.4 16.4 1.0
N A:THR282 4.6 11.8 1.0
O A:HOH1023 4.6 22.9 1.0
CB A:ALA281 4.7 10.9 1.0
CG A:LYS336 4.8 14.4 1.0
CA A:THR282 4.8 11.9 1.0
CA A:ASP283 4.8 13.2 1.0
C A:THR282 4.8 12.1 1.0
O A:HOH1062 4.9 28.3 1.0
O A:HOH947 4.9 33.1 1.0
C A:PRO277 5.0 16.5 1.0

Calcium binding site 3 out of 22 in 2zvd

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Calcium binding site 3 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca620

b:13.9
occ:1.00
O A:ALA393 2.3 15.6 1.0
OD1 A:ASP396 2.4 14.5 1.0
O A:SER374 2.4 15.5 1.0
O A:GLY391 2.4 12.3 1.0
O A:SER376 2.4 14.0 1.0
OD2 A:ASP378 2.5 12.0 1.0
OD2 A:ASP396 3.0 13.8 1.0
CG A:ASP396 3.0 14.7 1.0
CG A:ASP378 3.4 13.5 1.0
C A:GLY391 3.5 13.0 1.0
C A:SER374 3.5 15.8 1.0
C A:ALA393 3.6 16.2 1.0
C A:SER376 3.6 14.3 1.0
N A:SER376 3.9 14.6 1.0
C A:ARG392 4.0 14.8 1.0
O A:ARG392 4.0 14.3 1.0
N A:SER374 4.1 14.4 1.0
OD1 A:ASP378 4.1 13.8 1.0
N A:ASP378 4.1 14.4 1.0
N A:ALA393 4.2 15.1 1.0
CB A:ASP378 4.2 11.7 1.0
C A:ASP375 4.2 15.9 1.0
CA A:GLY391 4.3 13.1 1.0
OG A:SER374 4.3 13.3 1.0
CA A:ASP375 4.4 16.0 1.0
N A:ASP375 4.4 15.6 1.0
CA A:SER374 4.4 15.7 1.0
CA A:SER376 4.4 15.1 1.0
N A:ARG392 4.4 13.0 1.0
N A:GLY394 4.4 16.7 1.0
CA A:GLY394 4.5 16.3 1.0
CB A:ASP396 4.5 15.0 1.0
CA A:ALA393 4.5 16.1 1.0
N A:ASN377 4.5 14.6 1.0
CA A:CA622 4.5 17.6 1.0
O A:GLY394 4.6 15.3 1.0
CA A:ARG392 4.6 13.9 1.0
CA A:ASN377 4.6 15.1 1.0
C A:GLY394 4.7 16.7 1.0
CB A:ARG392 4.7 14.5 1.0
C A:ASN377 4.7 15.3 1.0
CA A:ASP378 4.8 13.8 1.0
O A:ASP375 4.8 15.9 1.0
C A:GLY373 4.9 14.4 1.0

Calcium binding site 4 out of 22 in 2zvd

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Calcium binding site 4 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca621

b:12.0
occ:1.00
OD2 A:ASP387 2.3 12.4 1.0
OD1 A:ASN405 2.4 12.9 1.0
O A:GLY383 2.4 12.1 1.0
OD2 A:ASP400 2.4 15.9 1.0
O A:GLY402 2.4 12.5 1.0
O A:GLY385 2.4 12.8 1.0
OD1 A:ASP400 2.6 16.0 1.0
CG A:ASP400 2.8 16.2 1.0
CG A:ASN405 3.3 13.7 1.0
CG A:ASP387 3.4 15.5 1.0
C A:GLY383 3.5 14.2 1.0
C A:GLY402 3.6 13.8 1.0
C A:GLY385 3.6 13.4 1.0
ND2 A:ASN405 3.6 12.8 1.0
CB A:ASP387 3.9 13.1 1.0
N A:GLY402 4.0 14.8 1.0
N A:ASP387 4.1 11.2 1.0
N A:GLY383 4.1 13.1 1.0
N A:GLY385 4.2 16.4 1.0
C A:SER384 4.2 15.9 1.0
O A:HOH1048 4.3 16.1 1.0
CB A:ASP400 4.4 14.8 1.0
N A:ASN386 4.4 12.0 1.0
CA A:ASN386 4.4 13.0 1.0
CA A:GLY402 4.4 14.4 1.0
N A:SER384 4.4 13.3 1.0
N A:GLY401 4.4 14.1 1.0
CA A:GLY383 4.4 13.2 1.0
OD1 A:ASP387 4.5 13.7 1.0
C A:ASN386 4.5 12.4 1.0
C A:GLY382 4.5 13.5 1.0
N A:GLY403 4.5 12.9 1.0
CA A:GLY385 4.5 13.8 1.0
CA A:SER384 4.6 15.9 1.0
O A:SER384 4.6 16.7 1.0
CA A:GLY403 4.6 13.2 1.0
CA A:ASP387 4.6 13.2 1.0
CB A:ASN405 4.6 12.1 1.0
C A:GLY403 4.8 13.1 1.0
CA A:GLY382 4.9 11.2 1.0
C A:GLY401 4.9 16.0 1.0
N A:TYR404 4.9 12.3 1.0
O A:HOH1083 4.9 19.3 1.0
C A:ASP400 5.0 15.2 1.0
O A:GLY382 5.0 13.3 1.0

Calcium binding site 5 out of 22 in 2zvd

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Calcium binding site 5 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca622

b:17.6
occ:1.00
OD2 A:ASP396 2.3 13.8 1.0
O A:GLY409 2.3 13.5 1.0
O A:ARG392 2.4 14.3 1.0
O A:ALA411 2.4 16.9 1.0
O A:GLY394 2.5 15.3 1.0
OD1 A:ASN414 2.6 14.1 1.0
CG A:ASP396 3.4 14.7 1.0
CG A:ASN414 3.4 14.1 1.0
C A:GLY409 3.5 14.2 1.0
C A:ARG392 3.6 14.8 1.0
ND2 A:ASN414 3.6 12.3 1.0
C A:ALA411 3.6 15.8 1.0
C A:GLY394 3.7 16.7 1.0
C A:ALA393 3.7 16.2 1.0
O A:ALA393 3.8 15.6 1.0
C A:GLY410 4.0 15.7 1.0
N A:GLY394 4.0 16.7 1.0
CB A:ASP396 4.1 15.0 1.0
CA A:ALA393 4.1 16.1 1.0
N A:ALA411 4.1 15.5 1.0
N A:ASP396 4.2 15.7 1.0
CA A:GLY410 4.2 15.8 1.0
OD1 A:ASP396 4.2 14.5 1.0
O A:GLY410 4.2 17.3 1.0
C A:GLY391 4.3 13.0 1.0
N A:ALA393 4.3 15.1 1.0
N A:GLY410 4.3 14.0 1.0
N A:ARG392 4.4 13.0 1.0
CA A:GLY394 4.5 16.3 1.0
O A:GLY391 4.5 12.3 1.0
CA A:ALA411 4.5 15.6 1.0
CA A:CA620 4.5 13.9 1.0
N A:GLY412 4.5 15.3 1.0
CA A:GLY412 4.6 14.8 1.0
CA A:GLY391 4.6 13.1 1.0
CA A:GLY409 4.6 13.5 1.0
CA A:ARG392 4.6 13.9 1.0
N A:ASN395 4.6 15.8 1.0
CB A:ASN414 4.7 14.8 1.0
CA A:ASN395 4.8 16.8 1.0
CA A:ASP396 4.8 15.1 1.0
C A:ASN395 4.9 16.5 1.0

Calcium binding site 6 out of 22 in 2zvd

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Calcium binding site 6 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca623

b:17.6
occ:1.00
OD2 A:ASP516 2.3 14.8 1.0
O A:GLY511 2.3 17.3 1.0
O A:THR494 2.3 18.3 1.0
O A:ASP513 2.3 16.4 1.0
OD2 A:ASP498 2.3 21.9 1.0
O A:GLY496 2.3 20.4 1.0
OD1 A:ASP516 2.9 19.5 1.0
CG A:ASP516 2.9 18.1 1.0
CG A:ASP498 3.4 22.0 1.0
C A:GLY511 3.4 17.0 1.0
C A:THR494 3.5 19.1 1.0
C A:ASP513 3.5 17.2 1.0
C A:GLY496 3.6 20.6 1.0
N A:ASP513 3.9 16.4 1.0
C A:LEU512 3.9 16.6 1.0
O A:LEU512 4.0 16.5 1.0
N A:THR494 4.0 19.6 1.0
N A:ASP498 4.1 21.1 1.0
OD1 A:ASP498 4.2 20.8 1.0
C A:ASN495 4.2 20.2 1.0
N A:GLY496 4.2 20.6 1.0
CA A:ASN495 4.3 20.1 1.0
CA A:GLY511 4.3 16.0 1.0
N A:ASN495 4.3 19.3 1.0
CB A:ASP498 4.3 20.6 1.0
CA A:GLY514 4.4 18.2 1.0
N A:LEU512 4.4 16.5 1.0
CB A:ASP516 4.4 15.0 1.0
N A:GLY514 4.4 18.6 1.0
CA A:LEU512 4.4 17.1 1.0
CA A:THR494 4.4 19.9 1.0
N A:ALA497 4.4 19.9 1.0
CA A:ALA497 4.5 20.8 1.0
CB A:LEU512 4.5 17.7 1.0
CA A:ASP513 4.5 17.1 1.0
CA A:GLY496 4.5 20.5 1.0
O A:GLY514 4.5 18.7 1.0
OG1 A:THR494 4.6 21.0 1.0
O A:ASN495 4.6 19.3 1.0
C A:GLY514 4.6 18.6 1.0
C A:ALA497 4.6 21.3 1.0
CA A:CA624 4.6 15.6 1.0
CA A:ASP498 4.9 21.4 1.0
C A:GLY493 4.9 20.1 1.0

Calcium binding site 7 out of 22 in 2zvd

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Calcium binding site 7 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca624

b:15.6
occ:1.00
OD1 A:ASP534 2.3 16.9 1.0
O A:LEU512 2.3 16.5 1.0
OD1 A:ASP516 2.4 19.5 1.0
O A:ALA531 2.4 14.2 1.0
O A:GLY529 2.4 14.5 1.0
O A:GLY514 2.4 18.7 1.0
CG A:ASP534 3.0 19.2 1.0
OD2 A:ASP534 3.1 20.3 1.0
CG A:ASP516 3.5 18.1 1.0
C A:GLY529 3.5 14.4 1.0
C A:LEU512 3.6 16.6 1.0
C A:ALA531 3.6 14.2 1.0
C A:GLY514 3.6 18.6 1.0
C A:ASP513 3.8 17.2 1.0
C A:GLY530 3.9 12.7 1.0
O A:ASP513 3.9 16.4 1.0
N A:GLY514 4.0 18.6 1.0
O A:GLY530 4.1 12.8 1.0
C A:GLY511 4.1 17.0 1.0
N A:ALA531 4.2 13.4 1.0
CB A:ASP516 4.2 15.0 1.0
N A:ASP516 4.2 17.0 1.0
N A:ASP513 4.2 16.4 1.0
CA A:GLY530 4.2 12.9 1.0
CA A:ASP513 4.3 17.1 1.0
N A:GLY530 4.3 13.0 1.0
O A:GLY511 4.3 17.3 1.0
OD2 A:ASP516 4.3 14.8 1.0
CA A:GLY532 4.4 14.8 1.0
N A:LEU512 4.4 16.5 1.0
CA A:GLY514 4.4 18.2 1.0
N A:GLY532 4.4 14.5 1.0
CA A:GLY511 4.4 16.0 1.0
CB A:ASP534 4.5 18.3 1.0
CA A:GLY529 4.5 14.5 1.0
CA A:ALA531 4.6 13.9 1.0
C A:GLY532 4.6 16.0 1.0
CA A:LEU512 4.6 17.1 1.0
O A:GLY532 4.6 15.8 1.0
CA A:CA623 4.6 17.6 1.0
N A:ASN515 4.6 17.9 1.0
CA A:CA626 4.6 16.4 1.0
CA A:ASN515 4.8 18.2 1.0
CA A:ASP516 4.9 16.6 1.0
C A:ASN515 4.9 17.9 1.0

Calcium binding site 8 out of 22 in 2zvd

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Calcium binding site 8 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca625

b:18.2
occ:1.00
O A:GLY540 2.3 19.9 1.0
OD2 A:ASP525 2.3 18.5 1.0
O A:GLY523 2.4 17.0 1.0
O A:GLY521 2.4 18.2 1.0
OD1 A:ASP543 2.5 15.3 1.0
O A:SER538 2.6 19.6 1.0
OD2 A:ASP543 2.7 18.0 1.0
CG A:ASP543 3.0 17.7 1.0
CG A:ASP525 3.4 17.2 1.0
C A:GLY540 3.5 20.3 1.0
C A:GLY521 3.6 18.3 1.0
C A:SER538 3.6 19.9 1.0
C A:GLY523 3.7 18.1 1.0
N A:GLY521 3.9 19.3 1.0
OG A:SER538 4.0 20.0 1.0
N A:GLY540 4.1 21.2 1.0
CB A:ASP525 4.1 15.6 1.0
N A:ASP525 4.1 16.6 1.0
OD1 A:ASP525 4.2 15.8 1.0
C A:GLY539 4.2 21.3 1.0
N A:GLY523 4.3 18.6 1.0
CA A:GLY540 4.3 20.5 1.0
C A:VAL522 4.3 18.9 1.0
CA A:GLY521 4.4 18.8 1.0
N A:GLY541 4.4 20.5 1.0
C A:GLY520 4.4 19.5 1.0
CA A:SER538 4.4 19.3 1.0
N A:GLY539 4.5 20.4 1.0
CA A:GLY541 4.5 20.1 1.0
CB A:ASP543 4.5 17.2 1.0
O A:HOH705 4.5 18.7 1.0
CA A:GLY520 4.5 18.7 1.0
CA A:GLY539 4.5 20.3 1.0
N A:VAL522 4.5 18.4 1.0
CA A:GLY523 4.6 18.4 1.0
N A:ASN524 4.6 18.1 1.0
CA A:VAL522 4.7 18.4 1.0
CA A:ASN524 4.7 18.1 1.0
O A:VAL522 4.7 20.8 1.0
O A:GLY539 4.8 21.8 1.0
CA A:ASP525 4.8 15.4 1.0
C A:ASN524 4.8 18.1 1.0
C A:GLY541 4.9 20.1 1.0
CB A:SER538 4.9 19.2 1.0
CE2 A:PHE527 4.9 15.7 1.0
CZ A:PHE527 5.0 13.9 1.0

Calcium binding site 9 out of 22 in 2zvd

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Calcium binding site 9 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca626

b:16.4
occ:1.00
OD2 A:ASP534 2.2 20.3 1.0
O A:PHE551 2.2 18.3 1.0
O A:GLY530 2.3 12.8 1.0
O A:HOH1092 2.4 20.0 1.0
O A:GLY532 2.4 15.8 1.0
OD1 A:ASP554 2.5 19.7 1.0
OD2 A:ASP554 3.2 22.4 1.0
CG A:ASP554 3.3 19.7 1.0
CG A:ASP534 3.3 19.2 1.0
C A:PHE551 3.4 17.2 1.0
C A:GLY530 3.5 12.7 1.0
C A:GLY532 3.6 16.0 1.0
O A:ALA531 3.9 14.2 1.0
C A:ALA531 3.9 14.2 1.0
CB A:ASP534 4.1 18.3 1.0
C A:GLY529 4.1 14.4 1.0
N A:GLY530 4.1 13.0 1.0
N A:GLY532 4.1 14.5 1.0
CA A:PHE551 4.2 17.6 1.0
N A:ASP534 4.2 18.3 1.0
OD1 A:ASP534 4.2 16.9 1.0
CB A:PHE551 4.3 15.7 1.0
N A:GLY552 4.3 18.0 1.0
CA A:GLY529 4.4 14.5 1.0
O A:GLY529 4.4 14.5 1.0
N A:ALA531 4.4 13.4 1.0
CA A:ALA531 4.4 13.9 1.0
CA A:GLY532 4.5 14.8 1.0
CA A:GLY530 4.5 12.9 1.0
CA A:GLY552 4.5 17.7 1.0
N A:ASN533 4.5 15.7 1.0
CA A:CA624 4.6 15.6 1.0
CA A:ASN533 4.7 17.1 1.0
CB A:ASP554 4.7 19.3 1.0
O A:HOH1091 4.8 19.3 1.0
CA A:ASP534 4.8 18.7 1.0
C A:ASN533 4.9 18.5 1.0
CD2 A:PHE551 4.9 16.4 1.0
C A:GLY552 4.9 18.2 1.0

Calcium binding site 10 out of 22 in 2zvd

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Calcium binding site 10 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca627

b:23.7
occ:1.00
O A:HOH1263 2.2 47.6 1.0
O A:HOH1232 2.3 43.1 1.0
O A:GLY541 2.4 21.7 1.0
OD1 A:ASP563 2.5 21.8 1.0
OD1 A:ASN562 2.5 21.8 1.0
OG1 A:THR560 2.6 24.4 1.0
OD2 A:ASP563 2.6 20.9 1.0
CG A:ASP563 2.9 21.3 1.0
C A:GLY541 3.6 20.1 1.0
CG A:ASN562 3.6 23.1 1.0
CB A:THR560 3.8 23.9 1.0
ND2 A:ASN562 4.2 24.8 1.0
CG2 A:THR560 4.2 24.3 1.0
CB A:ASP563 4.3 21.2 1.0
N A:THR560 4.4 23.2 1.0
N A:GLY541 4.4 20.5 1.0
OG A:SER538 4.4 20.0 1.0
CA A:ALA542 4.4 17.7 1.0
O A:HOH1036 4.4 32.2 1.0
N A:ASP563 4.4 22.8 1.0
N A:ALA542 4.5 19.1 1.0
CA A:THR560 4.5 24.1 1.0
C A:GLY540 4.5 20.3 1.0
CA A:GLY541 4.6 20.1 1.0
C A:ASN562 4.7 23.6 1.0
C A:THR560 4.7 24.4 1.0
O A:GLY558 4.7 21.6 1.0
N A:ASN562 4.7 23.4 1.0
N A:ASP543 4.8 17.6 1.0
CA A:ASP563 4.9 21.7 1.0
O A:GLY540 4.9 19.9 1.0
O A:THR560 4.9 24.5 1.0
CB A:ASN562 4.9 23.1 1.0
O A:HOH837 4.9 34.9 1.0
O A:HOH1019 4.9 40.9 1.0
CA A:GLY540 5.0 20.5 1.0
CA A:ASN562 5.0 23.5 1.0

Reference:

C.Angkawidjaja, H.Matsumura, Y.Koga, K.Takano, S.Kanaya. X-Ray Crystallographic and Md Simulation Studies on the Mechanism of Interfacial Activation of A Family I.3 Lipase with Two Lids J.Mol.Biol. 2010.
ISSN: ESSN 1089-8638
PubMed: 20438738
DOI: 10.1016/J.JMB.2010.04.051
Page generated: Sat Jul 13 06:52:06 2024

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