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Calcium in PDB 3a70: Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate

Enzymatic activity of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate

All present enzymatic activity of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate, PDB code: 3a70 was solved by C.Angkawidjaja, H.Matsumura, Y.Koga, K.Takano, S.Kanaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.91 / 2.15
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.297, 104.297, 496.182, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 22.2

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate (pdb code 3a70). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 22 binding sites of Calcium where determined in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate, PDB code: 3a70:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 22 in 3a70

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Calcium binding site 1 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca618

b:14.5
occ:1.00
OE2 A:GLU253 2.3 13.7 1.0
O A:HOH687 2.3 12.2 1.0
OD1 A:ASN284 2.4 10.1 1.0
O A:ASP283 2.4 13.5 1.0
OD2 A:ASP275 2.5 12.7 1.0
OD1 A:ASP275 2.5 15.0 1.0
O A:HOH1069 2.6 12.0 1.0
CG A:ASP275 2.9 13.1 1.0
C A:ASP283 3.5 13.5 1.0
CD A:GLU253 3.5 13.7 1.0
CG A:ASN284 3.6 11.1 1.0
CA A:ASN284 4.0 13.4 1.0
CB A:GLU253 4.0 13.1 1.0
N A:ASN284 4.2 13.1 1.0
O A:ASP275 4.2 12.6 1.0
CB A:ASN284 4.2 12.1 1.0
O A:HOH1066 4.3 14.9 1.0
CG A:GLU253 4.3 13.4 1.0
CB A:ASP275 4.4 12.1 1.0
CB A:ASP283 4.4 16.4 1.0
OE1 A:GLU253 4.4 17.1 1.0
NE2 A:HIS365 4.5 16.5 1.0
CA A:ASP283 4.5 15.0 1.0
NH1 A:ARG259 4.5 11.1 1.0
CD2 A:HIS365 4.6 12.1 1.0
O A:HOH700 4.6 8.9 1.0
CB A:ALA362 4.6 12.0 1.0
ND2 A:ASN284 4.6 13.3 1.0
O A:GLU363 4.8 15.9 1.0
N A:GLU363 4.8 14.3 1.0
NH2 A:ARG259 5.0 9.9 1.0

Calcium binding site 2 out of 22 in 3a70

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Calcium binding site 2 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca619

b:17.0
occ:1.00
OD2 A:ASP283 2.1 20.1 1.0
O A:ALA281 2.4 12.3 1.0
O A:LYS278 2.4 14.7 1.0
O A:HOH664 2.5 10.2 1.0
O A:HOH1070 2.5 14.9 1.0
OD2 A:ASP337 2.6 19.6 1.0
OD1 A:ASP337 2.6 16.8 1.0
CG A:ASP337 2.9 15.5 1.0
CG A:ASP283 3.3 19.3 1.0
C A:LYS278 3.4 15.8 1.0
C A:ALA281 3.6 12.8 1.0
N A:LYS278 3.9 15.3 1.0
CB A:ASP283 4.1 16.4 1.0
OD1 A:ASP283 4.1 26.6 1.0
N A:ALA281 4.2 13.7 1.0
N A:GLU279 4.2 17.4 1.0
N A:ASP283 4.3 13.4 1.0
O A:GLU279 4.3 16.4 1.0
CA A:LYS278 4.3 15.7 1.0
CA A:ALA281 4.3 13.2 1.0
CA A:GLU279 4.4 17.6 1.0
C A:GLU279 4.4 17.0 1.0
CB A:ASP337 4.4 13.8 1.0
N A:THR282 4.6 13.6 1.0
CG A:LYS336 4.7 16.1 1.0
CB A:ALA281 4.7 11.9 1.0
O A:HOH907 4.7 21.5 1.0
CA A:ASP283 4.8 15.0 1.0
O A:HOH926 4.8 30.2 1.0
CA A:THR282 4.8 12.7 1.0
C A:THR282 4.9 13.9 1.0
C A:PRO277 4.9 15.4 1.0

Calcium binding site 3 out of 22 in 3a70

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Calcium binding site 3 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca620

b:14.8
occ:1.00
O A:SER376 2.4 12.0 1.0
O A:SER374 2.4 13.2 1.0
OD1 A:ASP396 2.4 13.9 1.0
O A:ALA393 2.4 15.2 1.0
O A:GLY391 2.4 12.4 1.0
OD2 A:ASP378 2.4 16.9 1.0
OD2 A:ASP396 2.9 14.2 1.0
CG A:ASP396 2.9 16.2 1.0
CG A:ASP378 3.5 14.8 1.0
C A:GLY391 3.5 12.5 1.0
C A:SER374 3.5 13.5 1.0
C A:SER376 3.5 13.0 1.0
C A:ALA393 3.6 15.0 1.0
N A:SER376 3.9 13.1 1.0
C A:ARG392 4.0 13.0 1.0
O A:ARG392 4.1 12.0 1.0
N A:SER374 4.1 13.3 1.0
N A:ASP378 4.2 13.2 1.0
C A:ASP375 4.2 14.1 1.0
OD1 A:ASP378 4.3 12.4 1.0
N A:ALA393 4.3 13.2 1.0
CA A:GLY391 4.3 12.4 1.0
CB A:ASP378 4.3 13.2 1.0
CA A:SER376 4.3 13.9 1.0
CA A:ASP375 4.4 13.6 1.0
N A:ASP375 4.4 13.8 1.0
CB A:ASP396 4.4 13.9 1.0
CA A:SER374 4.4 13.1 1.0
CA A:GLY394 4.4 15.5 1.0
N A:ARG392 4.4 13.1 1.0
N A:GLY394 4.4 16.0 1.0
OG A:SER374 4.4 13.5 1.0
CA A:CA622 4.5 22.4 1.0
N A:ASN377 4.5 13.1 1.0
O A:GLY394 4.5 16.2 1.0
CA A:ARG392 4.5 12.6 1.0
CA A:ALA393 4.5 14.3 1.0
CB A:ARG392 4.6 13.4 1.0
C A:GLY394 4.6 16.0 1.0
CA A:ASN377 4.6 14.2 1.0
C A:ASN377 4.8 13.9 1.0
O A:ASP375 4.8 15.2 1.0
C A:GLY373 4.8 12.6 1.0
CA A:ASP378 4.9 13.0 1.0
CA A:GLY373 5.0 12.5 1.0

Calcium binding site 4 out of 22 in 3a70

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Calcium binding site 4 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca621

b:14.1
occ:1.00
OD2 A:ASP387 2.3 13.7 1.0
O A:GLY383 2.4 13.5 1.0
OD1 A:ASN405 2.4 10.5 1.0
O A:GLY402 2.4 14.8 1.0
O A:GLY385 2.4 11.0 1.0
OD2 A:ASP400 2.5 15.8 1.0
OD1 A:ASP400 2.5 12.6 1.0
CG A:ASP400 2.9 14.6 1.0
CG A:ASP387 3.3 14.2 1.0
CG A:ASN405 3.3 12.7 1.0
C A:GLY383 3.5 14.3 1.0
C A:GLY385 3.6 12.1 1.0
C A:GLY402 3.6 14.0 1.0
ND2 A:ASN405 3.7 7.8 1.0
CB A:ASP387 3.8 12.9 1.0
N A:GLY402 3.9 13.9 1.0
N A:ASP387 4.0 13.9 1.0
N A:GLY383 4.1 12.3 1.0
N A:GLY385 4.2 12.2 1.0
C A:SER384 4.2 14.0 1.0
O A:HOH1088 4.3 9.9 1.0
CA A:GLY402 4.3 13.5 1.0
OD1 A:ASP387 4.3 12.8 1.0
CB A:ASP400 4.4 13.7 1.0
N A:SER384 4.4 13.8 1.0
CA A:ASN386 4.4 13.4 1.0
N A:ASN386 4.4 13.0 1.0
CA A:GLY383 4.4 12.9 1.0
CA A:SER384 4.4 14.3 1.0
C A:ASN386 4.4 14.4 1.0
N A:GLY401 4.5 14.3 1.0
C A:GLY382 4.5 12.6 1.0
CA A:GLY385 4.5 12.6 1.0
CA A:ASP387 4.5 14.1 1.0
N A:GLY403 4.6 13.8 1.0
CB A:ASN405 4.6 11.2 1.0
O A:SER384 4.6 13.6 1.0
CA A:GLY403 4.7 13.2 1.0
CA A:GLY382 4.8 11.7 1.0
C A:GLY403 4.9 14.2 1.0
C A:GLY401 4.9 15.0 1.0
C A:ASP400 5.0 14.7 1.0
N A:TYR404 5.0 13.4 1.0
CA A:ASP400 5.0 14.2 1.0
O A:GLY382 5.0 12.3 1.0

Calcium binding site 5 out of 22 in 3a70

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Calcium binding site 5 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca622

b:22.4
occ:1.00
OD2 A:ASP396 2.3 14.2 1.0
O A:ARG392 2.4 12.0 1.0
O A:GLY409 2.4 13.5 1.0
O A:ALA411 2.4 15.1 1.0
O A:GLY394 2.5 16.2 1.0
OD1 A:ASN414 2.6 13.7 1.0
CG A:ASP396 3.4 16.2 1.0
CG A:ASN414 3.4 16.6 1.0
C A:ARG392 3.5 13.0 1.0
C A:GLY409 3.6 13.5 1.0
ND2 A:ASN414 3.6 12.0 1.0
C A:ALA411 3.7 15.6 1.0
C A:GLY394 3.7 16.0 1.0
O A:ALA393 3.7 15.2 1.0
C A:ALA393 3.7 15.0 1.0
C A:GLY410 3.9 14.6 1.0
N A:GLY394 4.0 16.0 1.0
CB A:ASP396 4.1 13.9 1.0
CA A:GLY410 4.1 14.2 1.0
N A:ALA411 4.1 14.1 1.0
CA A:ALA393 4.1 14.3 1.0
N A:ASP396 4.2 15.5 1.0
C A:GLY391 4.2 12.5 1.0
O A:GLY410 4.2 15.6 1.0
N A:ALA393 4.2 13.2 1.0
N A:GLY410 4.3 14.0 1.0
OD1 A:ASP396 4.3 13.9 1.0
N A:ARG392 4.4 13.1 1.0
O A:GLY391 4.4 12.4 1.0
CA A:GLY394 4.4 15.5 1.0
CA A:GLY391 4.4 12.4 1.0
CA A:CA620 4.5 14.8 1.0
CA A:ALA411 4.5 15.5 1.0
N A:GLY412 4.6 15.8 1.0
CA A:ARG392 4.6 12.6 1.0
CA A:GLY409 4.6 13.0 1.0
CA A:GLY412 4.7 15.5 1.0
N A:ASN395 4.7 15.1 1.0
CB A:ASN414 4.8 15.9 1.0
CA A:ASP396 4.8 15.3 1.0
CA A:ASN395 4.8 16.3 1.0
C A:ASN395 4.9 16.3 1.0

Calcium binding site 6 out of 22 in 3a70

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Calcium binding site 6 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca623

b:18.5
occ:1.00
O A:THR494 2.3 19.7 1.0
OD2 A:ASP516 2.3 14.5 1.0
O A:ASP513 2.3 17.0 1.0
OD2 A:ASP498 2.3 20.1 1.0
O A:GLY496 2.4 18.7 1.0
O A:GLY511 2.5 17.2 1.0
OD1 A:ASP516 2.9 18.1 1.0
CG A:ASP516 2.9 16.2 1.0
CG A:ASP498 3.4 20.0 1.0
C A:THR494 3.5 20.1 1.0
C A:GLY511 3.5 16.7 1.0
C A:ASP513 3.5 20.0 1.0
C A:GLY496 3.6 19.3 1.0
O A:LEU512 3.9 17.8 1.0
C A:LEU512 3.9 16.9 1.0
N A:THR494 4.0 20.6 1.0
OD1 A:ASP498 4.1 17.7 1.0
N A:ASP498 4.1 19.9 1.0
N A:ASP513 4.2 20.0 1.0
N A:GLY496 4.2 19.3 1.0
C A:ASN495 4.2 19.8 1.0
CA A:GLY511 4.2 16.3 1.0
CA A:ASN495 4.3 20.9 1.0
N A:ASN495 4.3 20.3 1.0
CB A:ASP498 4.3 19.7 1.0
N A:LEU512 4.3 17.2 1.0
CB A:ASP516 4.4 16.0 1.0
CA A:THR494 4.4 20.4 1.0
N A:GLY514 4.4 18.7 1.0
CB A:LEU512 4.4 18.1 1.0
CA A:LEU512 4.4 17.5 1.0
OG1 A:THR494 4.4 21.6 1.0
CA A:ASP513 4.4 20.0 1.0
N A:ALA497 4.4 19.1 1.0
CA A:ALA497 4.5 19.2 1.0
CA A:GLY514 4.5 18.0 1.0
CA A:GLY496 4.5 18.7 1.0
CA A:CA624 4.6 13.4 1.0
O A:GLY514 4.6 18.6 1.0
C A:ALA497 4.6 19.8 1.0
O A:ASN495 4.7 19.5 1.0
C A:GLY514 4.7 18.6 1.0
CA A:ASP498 4.9 19.9 1.0
C A:GLY493 4.9 21.0 1.0

Calcium binding site 7 out of 22 in 3a70

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Calcium binding site 7 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca624

b:13.4
occ:1.00
OD1 A:ASP516 2.3 18.1 1.0
OD1 A:ASP534 2.4 15.4 1.0
O A:ALA531 2.4 16.5 1.0
O A:GLY529 2.4 12.3 1.0
O A:GLY514 2.5 18.6 1.0
O A:LEU512 2.6 17.8 1.0
CG A:ASP534 3.1 18.8 1.0
OD2 A:ASP534 3.2 19.0 1.0
CG A:ASP516 3.4 16.2 1.0
C A:GLY529 3.5 12.5 1.0
C A:ALA531 3.6 16.5 1.0
C A:GLY514 3.6 18.6 1.0
C A:LEU512 3.7 16.9 1.0
C A:ASP513 3.7 20.0 1.0
N A:GLY514 3.8 18.7 1.0
O A:ASP513 3.8 17.0 1.0
C A:GLY530 3.9 15.3 1.0
O A:GLY530 3.9 15.7 1.0
CB A:ASP516 4.1 16.0 1.0
N A:ASP516 4.2 16.6 1.0
N A:ALA531 4.2 15.5 1.0
C A:GLY511 4.3 16.7 1.0
CA A:ASP513 4.3 20.0 1.0
N A:GLY530 4.3 13.2 1.0
CA A:GLY530 4.3 14.6 1.0
CA A:GLY511 4.3 16.3 1.0
OD2 A:ASP516 4.3 14.5 1.0
CA A:GLY514 4.3 18.0 1.0
CA A:GLY532 4.4 17.6 1.0
N A:ASP513 4.4 20.0 1.0
N A:GLY532 4.4 17.7 1.0
N A:LEU512 4.5 17.2 1.0
CA A:GLY529 4.5 12.8 1.0
C A:GLY532 4.6 18.7 1.0
CB A:ASP534 4.6 19.6 1.0
CA A:ALA531 4.6 16.8 1.0
O A:GLY532 4.6 18.2 1.0
N A:ASN515 4.6 17.9 1.0
CA A:CA623 4.6 18.5 1.0
O A:GLY511 4.6 17.2 1.0
CA A:CA626 4.6 15.9 1.0
CA A:LEU512 4.7 17.5 1.0
CA A:ASN515 4.7 17.8 1.0
CA A:ASP516 4.8 16.2 1.0
C A:ASN515 4.9 17.3 1.0

Calcium binding site 8 out of 22 in 3a70

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Calcium binding site 8 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca625

b:20.1
occ:1.00
O A:GLY540 2.3 22.1 1.0
OD2 A:ASP525 2.4 16.6 1.0
OD1 A:ASP543 2.5 15.7 1.0
O A:SER538 2.5 20.3 1.0
O A:GLY521 2.5 19.7 1.0
O A:GLY523 2.5 19.6 1.0
OD2 A:ASP543 2.5 18.8 1.0
CG A:ASP543 2.9 17.8 1.0
CG A:ASP525 3.5 17.1 1.0
C A:GLY540 3.5 21.3 1.0
C A:SER538 3.6 19.9 1.0
C A:GLY521 3.7 21.2 1.0
C A:GLY523 3.8 19.2 1.0
N A:GLY521 3.9 20.9 1.0
N A:GLY540 4.0 20.7 1.0
OG A:SER538 4.1 20.9 1.0
N A:ASP525 4.1 14.8 1.0
CB A:ASP525 4.2 14.4 1.0
C A:GLY539 4.3 20.6 1.0
CA A:GLY540 4.3 21.2 1.0
N A:GLY523 4.4 20.6 1.0
O A:HOH633 4.4 20.1 1.0
CB A:ASP543 4.4 17.4 1.0
OD1 A:ASP525 4.4 18.4 1.0
C A:GLY520 4.4 20.8 1.0
CA A:SER538 4.4 19.6 1.0
CA A:GLY521 4.4 20.7 1.0
C A:VAL522 4.5 21.3 1.0
CA A:GLY520 4.5 19.7 1.0
N A:GLY541 4.5 21.3 1.0
N A:GLY539 4.5 19.8 1.0
CA A:GLY539 4.6 19.7 1.0
CA A:GLY541 4.6 20.3 1.0
N A:VAL522 4.7 21.9 1.0
CA A:GLY523 4.7 19.9 1.0
N A:ASN524 4.7 18.5 1.0
CA A:ASN524 4.7 17.5 1.0
CA A:ASP525 4.8 14.8 1.0
CA A:VAL522 4.8 21.5 1.0
CE2 A:PHE527 4.8 16.2 1.0
O A:VAL522 4.8 21.2 1.0
C A:ASN524 4.9 17.5 1.0
CZ A:PHE527 4.9 14.2 1.0
O A:GLY539 4.9 21.4 1.0
CB A:SER538 4.9 19.5 1.0
C A:GLY541 4.9 19.9 1.0

Calcium binding site 9 out of 22 in 3a70

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Calcium binding site 9 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca626

b:15.9
occ:1.00
OD2 A:ASP534 2.1 19.0 1.0
O A:PHE551 2.3 16.2 1.0
O A:GLY532 2.4 18.2 1.0
O A:GLY530 2.4 15.7 1.0
OD1 A:ASP554 2.5 20.8 1.0
O A:HOH791 2.5 15.5 1.0
OD2 A:ASP554 3.1 20.8 1.0
CG A:ASP554 3.2 19.8 1.0
CG A:ASP534 3.2 18.8 1.0
C A:PHE551 3.4 16.8 1.0
C A:GLY532 3.5 18.7 1.0
C A:GLY530 3.6 15.3 1.0
C A:ALA531 4.0 16.5 1.0
O A:ALA531 4.0 16.5 1.0
N A:ASP534 4.0 18.6 1.0
CB A:ASP534 4.0 19.6 1.0
OD1 A:ASP534 4.1 15.4 1.0
N A:GLY532 4.1 17.7 1.0
C A:GLY529 4.1 12.5 1.0
N A:GLY530 4.2 13.2 1.0
CA A:PHE551 4.3 17.4 1.0
N A:GLY552 4.4 16.9 1.0
CA A:GLY532 4.4 17.6 1.0
CA A:GLY529 4.4 12.8 1.0
CB A:PHE551 4.5 16.1 1.0
N A:ASN533 4.5 18.1 1.0
CA A:ALA531 4.5 16.8 1.0
O A:GLY529 4.5 12.3 1.0
N A:ALA531 4.5 15.5 1.0
CA A:ASN533 4.5 18.4 1.0
CA A:GLY552 4.5 17.1 1.0
CA A:GLY530 4.6 14.6 1.0
CB A:ASP554 4.6 17.1 1.0
CA A:CA624 4.6 13.4 1.0
CA A:ASP534 4.7 18.8 1.0
C A:ASN533 4.7 18.2 1.0
CD2 A:PHE551 4.9 14.5 1.0
C A:GLY552 5.0 17.7 1.0

Calcium binding site 10 out of 22 in 3a70

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Calcium binding site 10 out of 22 in the Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Pseudomonas Sp. MIS38 Lipase in Complex with Diethyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca627

b:28.1
occ:1.00
O A:HOH648 2.1 24.7 1.0
O A:HOH832 2.3 25.9 1.0
O A:GLY541 2.3 19.6 1.0
OD1 A:ASN562 2.5 22.2 1.0
OG1 A:THR560 2.5 22.7 1.0
OD2 A:ASP563 2.6 21.5 1.0
OD1 A:ASP563 2.7 26.3 1.0
CG A:ASP563 2.9 22.0 1.0
CG A:ASN562 3.5 21.5 1.0
C A:GLY541 3.5 19.9 1.0
CB A:THR560 3.8 22.7 1.0
ND2 A:ASN562 3.9 22.4 1.0
N A:THR560 4.3 23.2 1.0
CB A:ASP563 4.3 19.9 1.0
CG2 A:THR560 4.3 22.8 1.0
CA A:ALA542 4.3 19.9 1.0
N A:ALA542 4.3 20.5 1.0
N A:GLY541 4.4 21.3 1.0
O A:HOH838 4.4 33.2 1.0
OG A:SER538 4.4 20.9 1.0
N A:ASP563 4.4 20.9 1.0
CA A:THR560 4.4 23.3 1.0
CA A:GLY541 4.6 20.3 1.0
C A:GLY540 4.6 21.3 1.0
C A:ASN562 4.6 21.9 1.0
C A:THR560 4.7 23.9 1.0
O A:GLY558 4.7 22.6 1.0
N A:ASN562 4.7 23.2 1.0
N A:ASP543 4.7 17.3 1.0
CB A:ASN562 4.8 22.8 1.0
CA A:ASP563 4.8 20.9 1.0
O A:THR560 4.9 23.8 1.0
O A:GLY540 4.9 22.1 1.0
O A:HOH843 4.9 32.6 1.0
CA A:ASN562 5.0 22.4 1.0
O A:HOH839 5.0 39.6 1.0

Reference:

C.Angkawidjaja, H.Matsumura, Y.Koga, K.Takano, S.Kanaya. X-Ray Crystallographic and Md Simulation Studies on the Mechanism of Interfacial Activation of A Family I.3 Lipase with Two Lids J.Mol.Biol. 2010.
ISSN: ESSN 1089-8638
PubMed: 20438738
DOI: 10.1016/J.JMB.2010.04.051
Page generated: Sat Dec 12 04:02:58 2020

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