Calcium in PDB 3aco: Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A)

The structure of Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A), PDB code: 3aco was solved by A.Shimada, M.Shirouzu, K.Hanawa-Suetsugu, T.Terada, T.Umehara, S.Suetsugu, M.Yamamoto, S.Yokoyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.88 / 2.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	31.607, 84.654, 357.335, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 27.9

The binding sites of Calcium atom in the Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A) (pdb code 3aco). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A), PDB code: 3aco:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca400 b:57.1 occ:1.00 O A:LYS117 2.8 0.1 1.0 CA A:CA401 3.3 58.4 1.0 CA A:HIS121 3.5 82.0 1.0 CA A:GLU118 3.5 40.2 1.0 N A:HIS121 3.6 77.1 1.0 O A:PHE120 3.6 61.1 1.0 N A:ALA119 3.6 60.6 1.0 C A:PHE120 3.6 59.5 1.0 OE2 A:GLU118 3.6 73.1 1.0 OE1 A:GLU118 3.7 70.9 1.0 C A:LYS117 3.7 0.9 1.0 CD A:GLU118 3.7 71.6 1.0 O A:HOH462 3.8 77.5 1.0 C A:GLU118 4.0 42.0 1.0 O A:HOH429 4.0 47.7 1.0 N A:PHE120 4.0 51.1 1.0 N A:GLU118 4.0 36.3 1.0 CB A:HIS121 4.2 65.0 1.0 CA A:PHE120 4.5 54.7 1.0 C A:ALA119 4.5 64.0 1.0 ND1 A:HIS121 4.5 71.5 1.0 CB A:GLU118 4.6 64.2 1.0 CA A:ALA119 4.6 62.0 1.0 CG A:GLU118 4.7 70.0 1.0 C A:HIS121 4.8 82.8 1.0 CG A:HIS121 4.9 69.8 1.0 N A:LYS122 4.9 54.5 1.0 CA A:LYS117 5.0 0.4 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Efc/F-Bar Domain of Human PACSIN2/Syndapin II (2.7 A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:58.4 occ:1.00 O A:LYS117 2.8 0.1 1.0 C A:LYS117 3.1 0.9 1.0 O A:HOH380 3.2 65.3 1.0 O A:PHE120 3.3 61.1 1.0 CA A:LYS117 3.3 0.4 1.0 CA A:CA400 3.3 57.1 1.0 CB A:LYS117 3.4 32.8 1.0 N A:GLU118 4.1 36.3 1.0 OE2 A:GLU118 4.2 73.1 1.0 C A:PHE120 4.3 59.5 1.0 N A:LYS122 4.3 54.5 1.0 CG A:LYS117 4.4 29.3 1.0 O A:HOH434 4.7 53.4 1.0 N A:LYS117 4.7 0.2 1.0 CA A:GLU118 4.7 40.2 1.0 CA A:HIS121 4.7 82.0 1.0 CB A:LYS122 4.8 61.7 1.0 N A:HIS121 4.9 77.1 1.0 CD A:GLU118 5.0 71.6 1.0

A.Shimada, K.Takano, M.Shirouzu, K.Hanawa-Suetsugu, T.Terada, K.Toyooka, T.Umehara, M.Yamamoto, S.Yokoyama, S.Suetsugu. Mapping of the Basic Amino-Acid Residues Responsible For Tubulation and Cellular Protrusion By the Efc/F-Bar Domain of PACSIN2/Syndapin II Febs Lett. V. 584 1111 2010.
ISSN: ISSN 0014-5793
PubMed: 20188097
DOI: 10.1016/J.FEBSLET.2010.02.058