Calcium in PDB 3ala: Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
Enzymatic activity of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
All present enzymatic activity of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2:
1.4.3.21;
Protein crystallography data
The structure of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2, PDB code: 3ala
was solved by
K.E.Ernberg,
A.P.Mcgrath,
J.M.Guss,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
110.40 /
2.90
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
394.468,
115.826,
179.286,
90.00,
112.34,
90.00
|
|
R / Rfree (%)
|
25 /
28.6
|
Other elements in 3ala:
The structure of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
(pdb code 3ala). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2, PDB code: 3ala:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 1 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1763
b:32.0
occ:1.00
|
OD1
|
A:ASP529
|
2.2
|
37.3
|
1.0
|
|
OD1
|
A:ASP531
|
2.2
|
36.2
|
1.0
|
|
OD1
|
A:ASP673
|
2.4
|
38.2
|
1.0
|
|
O
|
A:HOH784
|
2.4
|
43.1
|
1.0
|
|
O
|
A:LEU674
|
2.4
|
35.7
|
1.0
|
|
O
|
A:LEU530
|
2.5
|
36.1
|
1.0
|
|
CG
|
A:ASP529
|
3.4
|
39.3
|
1.0
|
|
CG
|
A:ASP673
|
3.4
|
38.1
|
1.0
|
|
CG
|
A:ASP531
|
3.5
|
39.2
|
1.0
|
|
N
|
A:LEU674
|
3.5
|
38.5
|
1.0
|
|
C
|
A:LEU530
|
3.5
|
37.2
|
1.0
|
|
C
|
A:LEU674
|
3.5
|
36.9
|
1.0
|
|
NZ
|
A:LYS106
|
3.6
|
37.6
|
1.0
|
|
OD2
|
A:ASP529
|
4.0
|
37.8
|
1.0
|
|
C
|
A:ASP673
|
4.0
|
38.6
|
1.0
|
|
CA
|
A:ASP531
|
4.1
|
39.9
|
1.0
|
|
OD2
|
A:ASP673
|
4.1
|
39.1
|
1.0
|
|
CA
|
A:LEU674
|
4.1
|
38.0
|
1.0
|
|
N
|
A:ASP531
|
4.1
|
38.3
|
1.0
|
|
C
|
A:ASP529
|
4.2
|
39.1
|
1.0
|
|
CA
|
A:ASP673
|
4.2
|
38.8
|
1.0
|
|
N
|
A:LEU530
|
4.3
|
39.8
|
1.0
|
|
CB
|
A:ASP531
|
4.4
|
41.1
|
1.0
|
|
OD2
|
A:ASP531
|
4.4
|
39.6
|
1.0
|
|
CB
|
A:ASP673
|
4.4
|
39.2
|
1.0
|
|
O
|
A:ASP529
|
4.4
|
37.8
|
1.0
|
|
CA
|
A:ASP529
|
4.5
|
38.1
|
1.0
|
|
CA
|
A:LEU530
|
4.5
|
38.7
|
1.0
|
|
CB
|
A:ASP529
|
4.5
|
39.3
|
1.0
|
|
O
|
A:LEU535
|
4.5
|
39.5
|
1.0
|
|
N
|
A:VAL675
|
4.6
|
37.0
|
1.0
|
|
O
|
A:ASP673
|
4.9
|
37.6
|
1.0
|
|
OD1
|
A:ASN537
|
4.9
|
36.2
|
1.0
|
|
CB
|
A:LEU674
|
4.9
|
39.1
|
1.0
|
|
Calcium binding site 2 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 2 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1764
b:50.5
occ:1.00
|
O
|
A:PHE663
|
2.2
|
38.6
|
1.0
|
|
OD1
|
A:ASN665
|
2.3
|
40.2
|
1.0
|
|
OE2
|
A:GLU572
|
2.5
|
43.5
|
1.0
|
|
OE1
|
A:GLU667
|
2.9
|
40.8
|
1.0
|
|
OE1
|
A:GLU572
|
3.0
|
41.1
|
1.0
|
|
CD
|
A:GLU572
|
3.1
|
41.9
|
1.0
|
|
C
|
A:PHE663
|
3.4
|
39.5
|
1.0
|
|
CG
|
A:ASN665
|
3.6
|
40.8
|
1.0
|
|
CD
|
A:GLU667
|
3.6
|
43.2
|
1.0
|
|
NZ
|
A:LYS638
|
3.6
|
38.6
|
1.0
|
|
OE1
|
A:GLU641
|
3.7
|
41.5
|
1.0
|
|
OE2
|
A:GLU641
|
3.8
|
40.1
|
1.0
|
|
OE2
|
A:GLU667
|
4.0
|
41.8
|
1.0
|
|
CA
|
A:PHE663
|
4.1
|
38.9
|
1.0
|
|
CB
|
A:THR635
|
4.2
|
37.7
|
1.0
|
|
CD
|
A:GLU641
|
4.2
|
42.2
|
1.0
|
|
N
|
A:GLN636
|
4.4
|
37.7
|
1.0
|
|
N
|
A:ASN665
|
4.4
|
40.1
|
1.0
|
|
ND2
|
A:ASN665
|
4.5
|
38.3
|
1.0
|
|
N
|
A:ILE664
|
4.5
|
39.6
|
1.0
|
|
CE
|
A:LYS638
|
4.5
|
38.7
|
1.0
|
|
CB
|
A:ASN665
|
4.5
|
39.9
|
1.0
|
|
CG
|
A:GLU667
|
4.5
|
42.0
|
1.0
|
|
O
|
A:GLN636
|
4.5
|
40.2
|
1.0
|
|
CB
|
A:PHE663
|
4.6
|
39.1
|
1.0
|
|
CG2
|
A:THR635
|
4.6
|
35.8
|
1.0
|
|
CG
|
A:GLU572
|
4.6
|
39.4
|
1.0
|
|
CD
|
A:LYS638
|
4.7
|
39.8
|
1.0
|
|
CA
|
A:ILE664
|
4.7
|
38.7
|
1.0
|
|
CB
|
A:GLN636
|
4.8
|
38.4
|
1.0
|
|
CA
|
A:THR635
|
4.9
|
38.3
|
1.0
|
|
OG1
|
A:THR635
|
5.0
|
40.6
|
1.0
|
|
Calcium binding site 3 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 3 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1763
b:35.9
occ:1.00
|
O
|
B:LEU530
|
2.2
|
35.8
|
1.0
|
|
OD1
|
B:ASP531
|
2.3
|
36.8
|
1.0
|
|
OD1
|
B:ASP529
|
2.4
|
36.8
|
1.0
|
|
O
|
B:LEU674
|
2.4
|
36.0
|
1.0
|
|
OD1
|
B:ASP673
|
2.5
|
38.4
|
1.0
|
|
C
|
B:LEU530
|
3.3
|
37.3
|
1.0
|
|
N
|
B:LEU674
|
3.4
|
38.2
|
1.0
|
|
CG
|
B:ASP531
|
3.5
|
39.3
|
1.0
|
|
C
|
B:LEU674
|
3.5
|
36.9
|
1.0
|
|
CG
|
B:ASP673
|
3.5
|
38.2
|
1.0
|
|
CG
|
B:ASP529
|
3.6
|
39.3
|
1.0
|
|
NZ
|
B:LYS106
|
3.9
|
37.6
|
1.0
|
|
CA
|
B:ASP531
|
3.9
|
40.0
|
1.0
|
|
N
|
B:ASP531
|
3.9
|
38.6
|
1.0
|
|
CA
|
B:LEU674
|
4.0
|
38.1
|
1.0
|
|
C
|
B:ASP673
|
4.1
|
38.5
|
1.0
|
|
CA
|
B:ASP673
|
4.2
|
38.5
|
1.0
|
|
N
|
B:LEU530
|
4.2
|
39.8
|
1.0
|
|
OD2
|
B:ASP673
|
4.2
|
39.1
|
1.0
|
|
OD2
|
B:ASP529
|
4.3
|
38.3
|
1.0
|
|
CB
|
B:ASP531
|
4.3
|
41.0
|
1.0
|
|
C
|
B:ASP529
|
4.3
|
39.3
|
1.0
|
|
O
|
B:LEU535
|
4.3
|
39.5
|
1.0
|
|
CA
|
B:LEU530
|
4.4
|
38.8
|
1.0
|
|
CB
|
B:ASP673
|
4.5
|
39.2
|
1.0
|
|
OD2
|
B:ASP531
|
4.5
|
39.8
|
1.0
|
|
OD1
|
B:ASN537
|
4.5
|
36.0
|
1.0
|
|
O
|
B:ASP529
|
4.6
|
38.0
|
1.0
|
|
CA
|
B:ASP529
|
4.6
|
38.3
|
1.0
|
|
N
|
B:VAL675
|
4.7
|
37.1
|
1.0
|
|
CB
|
B:ASP529
|
4.7
|
39.0
|
1.0
|
|
CB
|
B:LEU674
|
4.8
|
39.2
|
1.0
|
|
O
|
B:ASP673
|
5.0
|
37.9
|
1.0
|
|
Calcium binding site 4 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 4 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1764
b:88.5
occ:1.00
|
O
|
B:PHE663
|
2.3
|
38.9
|
1.0
|
|
OD1
|
B:ASN665
|
2.4
|
40.2
|
1.0
|
|
OE2
|
B:GLU572
|
2.6
|
43.6
|
1.0
|
|
OE1
|
B:GLU667
|
2.8
|
40.2
|
1.0
|
|
OE1
|
B:GLU572
|
3.2
|
41.4
|
1.0
|
|
CD
|
B:GLU572
|
3.3
|
42.0
|
1.0
|
|
C
|
B:PHE663
|
3.5
|
39.5
|
1.0
|
|
NZ
|
B:LYS638
|
3.5
|
38.9
|
1.0
|
|
CD
|
B:GLU667
|
3.5
|
43.2
|
1.0
|
|
CG
|
B:ASN665
|
3.6
|
40.9
|
1.0
|
|
OE1
|
B:GLU641
|
3.7
|
41.6
|
1.0
|
|
OE2
|
B:GLU641
|
3.8
|
39.9
|
1.0
|
|
OE2
|
B:GLU667
|
4.0
|
42.0
|
1.0
|
|
CA
|
B:PHE663
|
4.2
|
38.8
|
1.0
|
|
CD
|
B:GLU641
|
4.2
|
42.1
|
1.0
|
|
CB
|
B:THR635
|
4.2
|
37.8
|
1.0
|
|
CE
|
B:LYS638
|
4.3
|
38.8
|
1.0
|
|
O
|
B:GLN636
|
4.4
|
39.5
|
1.0
|
|
N
|
B:GLN636
|
4.4
|
37.9
|
1.0
|
|
CD
|
B:LYS638
|
4.4
|
40.0
|
1.0
|
|
ND2
|
B:ASN665
|
4.5
|
38.3
|
1.0
|
|
CG
|
B:GLU667
|
4.6
|
42.2
|
1.0
|
|
N
|
B:ASN665
|
4.6
|
39.8
|
1.0
|
|
CB
|
B:ASN665
|
4.6
|
40.2
|
1.0
|
|
N
|
B:ILE664
|
4.6
|
39.7
|
1.0
|
|
CB
|
B:PHE663
|
4.6
|
39.0
|
1.0
|
|
CG2
|
B:THR635
|
4.7
|
35.9
|
1.0
|
|
CB
|
B:GLN636
|
4.7
|
38.4
|
1.0
|
|
CG
|
B:GLU572
|
4.7
|
39.4
|
1.0
|
|
CA
|
B:ILE664
|
4.9
|
38.7
|
1.0
|
|
Calcium binding site 5 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 5 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1763
b:34.9
occ:1.00
|
O
|
C:LEU674
|
2.3
|
36.0
|
1.0
|
|
OD1
|
C:ASP673
|
2.3
|
38.5
|
1.0
|
|
OD1
|
C:ASP529
|
2.3
|
37.1
|
1.0
|
|
OD1
|
C:ASP531
|
2.4
|
36.7
|
1.0
|
|
O
|
C:LEU530
|
2.4
|
35.9
|
1.0
|
|
N
|
C:LEU674
|
3.3
|
38.3
|
1.0
|
|
C
|
C:LEU674
|
3.4
|
37.0
|
1.0
|
|
CG
|
C:ASP673
|
3.4
|
38.2
|
1.0
|
|
C
|
C:LEU530
|
3.5
|
37.2
|
1.0
|
|
CG
|
C:ASP529
|
3.5
|
39.2
|
1.0
|
|
CG
|
C:ASP531
|
3.6
|
39.2
|
1.0
|
|
NZ
|
C:LYS106
|
3.7
|
37.5
|
1.0
|
|
CA
|
C:LEU674
|
3.9
|
38.1
|
1.0
|
|
C
|
C:ASP673
|
4.0
|
38.6
|
1.0
|
|
CA
|
C:ASP531
|
4.1
|
40.1
|
1.0
|
|
N
|
C:ASP531
|
4.1
|
38.6
|
1.0
|
|
OD2
|
C:ASP673
|
4.1
|
39.0
|
1.0
|
|
CA
|
C:ASP673
|
4.2
|
38.7
|
1.0
|
|
OD2
|
C:ASP529
|
4.2
|
37.6
|
1.0
|
|
C
|
C:ASP529
|
4.3
|
39.2
|
1.0
|
|
N
|
C:LEU530
|
4.3
|
39.8
|
1.0
|
|
CB
|
C:ASP673
|
4.4
|
39.4
|
1.0
|
|
CB
|
C:ASP531
|
4.5
|
41.1
|
1.0
|
|
O
|
C:LEU535
|
4.5
|
39.9
|
1.0
|
|
N
|
C:VAL675
|
4.5
|
37.0
|
1.0
|
|
CA
|
C:LEU530
|
4.5
|
38.6
|
1.0
|
|
OD2
|
C:ASP531
|
4.5
|
39.5
|
1.0
|
|
O
|
C:ASP529
|
4.6
|
38.2
|
1.0
|
|
CA
|
C:ASP529
|
4.6
|
38.2
|
1.0
|
|
CB
|
C:ASP529
|
4.6
|
39.3
|
1.0
|
|
OD1
|
C:ASN537
|
4.7
|
36.1
|
1.0
|
|
CB
|
C:LEU674
|
4.7
|
39.2
|
1.0
|
|
O
|
C:ASP673
|
4.8
|
37.8
|
1.0
|
|
CA
|
C:VAL675
|
4.9
|
37.5
|
1.0
|
|
Calcium binding site 6 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 6 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1764
b:53.3
occ:1.00
|
O
|
C:PHE663
|
2.4
|
38.9
|
1.0
|
|
OD1
|
C:ASN665
|
2.5
|
40.1
|
1.0
|
|
OE2
|
C:GLU572
|
2.6
|
43.4
|
1.0
|
|
OE1
|
C:GLU667
|
2.9
|
40.5
|
1.0
|
|
OE1
|
C:GLU572
|
3.2
|
41.2
|
1.0
|
|
CD
|
C:GLU572
|
3.2
|
41.9
|
1.0
|
|
C
|
C:PHE663
|
3.5
|
39.6
|
1.0
|
|
NZ
|
C:LYS638
|
3.6
|
38.9
|
1.0
|
|
CD
|
C:GLU667
|
3.6
|
43.0
|
1.0
|
|
OE1
|
C:GLU641
|
3.7
|
41.6
|
1.0
|
|
CG
|
C:ASN665
|
3.7
|
40.9
|
1.0
|
|
OE2
|
C:GLU641
|
3.9
|
40.1
|
1.0
|
|
OE2
|
C:GLU667
|
4.1
|
42.0
|
1.0
|
|
CB
|
C:THR635
|
4.1
|
38.1
|
1.0
|
|
CD
|
C:GLU641
|
4.2
|
42.1
|
1.0
|
|
CA
|
C:PHE663
|
4.2
|
38.9
|
1.0
|
|
N
|
C:GLN636
|
4.3
|
37.9
|
1.0
|
|
CE
|
C:LYS638
|
4.3
|
38.7
|
1.0
|
|
O
|
C:GLN636
|
4.3
|
39.9
|
1.0
|
|
CD
|
C:LYS638
|
4.5
|
39.7
|
1.0
|
|
ND2
|
C:ASN665
|
4.5
|
38.7
|
1.0
|
|
CB
|
C:GLN636
|
4.6
|
38.4
|
1.0
|
|
CB
|
C:PHE663
|
4.6
|
39.1
|
1.0
|
|
CG
|
C:GLU667
|
4.6
|
41.9
|
1.0
|
|
CG2
|
C:THR635
|
4.6
|
36.0
|
1.0
|
|
N
|
C:ILE664
|
4.6
|
39.6
|
1.0
|
|
CG
|
C:GLU572
|
4.7
|
39.8
|
1.0
|
|
N
|
C:ASN665
|
4.7
|
40.2
|
1.0
|
|
CB
|
C:ASN665
|
4.7
|
40.1
|
1.0
|
|
OG1
|
C:THR635
|
4.9
|
40.5
|
1.0
|
|
CA
|
C:THR635
|
4.9
|
38.5
|
1.0
|
|
CA
|
C:GLN636
|
4.9
|
38.6
|
1.0
|
|
CA
|
C:ILE664
|
4.9
|
38.6
|
1.0
|
|
Calcium binding site 7 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 7 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1763
b:39.9
occ:1.00
|
O
|
D:LEU674
|
2.2
|
36.3
|
1.0
|
|
OD1
|
D:ASP529
|
2.3
|
37.4
|
1.0
|
|
O
|
D:LEU530
|
2.3
|
36.1
|
1.0
|
|
OD1
|
D:ASP531
|
2.4
|
36.5
|
1.0
|
|
OD1
|
D:ASP673
|
2.4
|
38.6
|
1.0
|
|
C
|
D:LEU674
|
3.3
|
37.1
|
1.0
|
|
N
|
D:LEU674
|
3.3
|
38.3
|
1.0
|
|
C
|
D:LEU530
|
3.4
|
37.6
|
1.0
|
|
CG
|
D:ASP529
|
3.5
|
39.7
|
1.0
|
|
CG
|
D:ASP673
|
3.6
|
38.4
|
1.0
|
|
CG
|
D:ASP531
|
3.6
|
39.3
|
1.0
|
|
NZ
|
D:LYS106
|
3.9
|
37.5
|
1.0
|
|
CA
|
D:LEU674
|
3.9
|
38.2
|
1.0
|
|
C
|
D:ASP673
|
4.0
|
38.6
|
1.0
|
|
CA
|
D:ASP531
|
4.1
|
40.0
|
1.0
|
|
N
|
D:ASP531
|
4.1
|
38.5
|
1.0
|
|
N
|
D:LEU530
|
4.2
|
39.8
|
1.0
|
|
C
|
D:ASP529
|
4.2
|
39.2
|
1.0
|
|
OD2
|
D:ASP529
|
4.2
|
38.2
|
1.0
|
|
CA
|
D:ASP673
|
4.3
|
38.9
|
1.0
|
|
OD2
|
D:ASP673
|
4.3
|
39.1
|
1.0
|
|
CA
|
D:LEU530
|
4.4
|
38.9
|
1.0
|
|
CB
|
D:ASP531
|
4.4
|
41.1
|
1.0
|
|
N
|
D:VAL675
|
4.5
|
37.2
|
1.0
|
|
CA
|
D:ASP529
|
4.5
|
38.3
|
1.0
|
|
OD2
|
D:ASP531
|
4.5
|
40.1
|
1.0
|
|
O
|
D:ASP529
|
4.5
|
38.1
|
1.0
|
|
CB
|
D:ASP673
|
4.5
|
39.2
|
1.0
|
|
O
|
D:LEU535
|
4.5
|
39.9
|
1.0
|
|
CB
|
D:ASP529
|
4.6
|
39.5
|
1.0
|
|
CB
|
D:LEU674
|
4.7
|
39.1
|
1.0
|
|
OD1
|
D:ASN537
|
4.7
|
36.2
|
1.0
|
|
CA
|
D:VAL675
|
4.8
|
37.8
|
1.0
|
|
O
|
D:ASP673
|
4.9
|
38.1
|
1.0
|
|
Calcium binding site 8 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 8 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1764
b:65.7
occ:1.00
|
OD1
|
D:ASN665
|
2.4
|
40.1
|
1.0
|
|
O
|
D:PHE663
|
2.4
|
39.0
|
1.0
|
|
OE2
|
D:GLU572
|
2.9
|
43.5
|
1.0
|
|
OE1
|
D:GLU667
|
3.1
|
40.6
|
1.0
|
|
NZ
|
D:LYS638
|
3.4
|
38.7
|
1.0
|
|
OE2
|
D:GLU641
|
3.4
|
40.4
|
1.0
|
|
OE1
|
D:GLU572
|
3.5
|
41.2
|
1.0
|
|
OE1
|
D:GLU641
|
3.5
|
41.7
|
1.0
|
|
C
|
D:PHE663
|
3.5
|
39.7
|
1.0
|
|
CD
|
D:GLU572
|
3.6
|
42.1
|
1.0
|
|
CG
|
D:ASN665
|
3.6
|
40.9
|
1.0
|
|
CD
|
D:GLU667
|
3.7
|
43.3
|
1.0
|
|
CD
|
D:GLU641
|
3.9
|
42.3
|
1.0
|
|
OE2
|
D:GLU667
|
3.9
|
42.3
|
1.0
|
|
CA
|
D:PHE663
|
4.0
|
39.0
|
1.0
|
|
CE
|
D:LYS638
|
4.2
|
38.7
|
1.0
|
|
CD
|
D:LYS638
|
4.3
|
40.2
|
1.0
|
|
ND2
|
D:ASN665
|
4.4
|
38.5
|
1.0
|
|
CB
|
D:THR635
|
4.4
|
38.0
|
1.0
|
|
O
|
D:GLN636
|
4.5
|
39.7
|
1.0
|
|
CB
|
D:PHE663
|
4.5
|
39.2
|
1.0
|
|
CB
|
D:ASN665
|
4.6
|
40.1
|
1.0
|
|
N
|
D:ILE664
|
4.6
|
39.6
|
1.0
|
|
N
|
D:GLN636
|
4.7
|
38.3
|
1.0
|
|
N
|
D:ASN665
|
4.7
|
40.1
|
1.0
|
|
CG
|
D:GLU667
|
4.7
|
42.2
|
1.0
|
|
CB
|
D:GLN636
|
4.9
|
38.5
|
1.0
|
|
CG2
|
D:THR635
|
4.9
|
36.2
|
1.0
|
|
CA
|
D:ILE664
|
5.0
|
38.9
|
1.0
|
|
Calcium binding site 9 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 9 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1763
b:43.3
occ:1.00
|
O
|
E:LEU530
|
2.3
|
36.2
|
1.0
|
|
O
|
E:LEU674
|
2.4
|
36.6
|
1.0
|
|
OD1
|
E:ASP531
|
2.4
|
36.6
|
1.0
|
|
OD1
|
E:ASP673
|
2.4
|
38.8
|
1.0
|
|
OD1
|
E:ASP529
|
2.7
|
37.1
|
1.0
|
|
N
|
E:LEU674
|
3.1
|
38.5
|
1.0
|
|
C
|
E:LEU674
|
3.4
|
37.1
|
1.0
|
|
C
|
E:LEU530
|
3.4
|
37.5
|
1.0
|
|
CG
|
E:ASP673
|
3.5
|
38.4
|
1.0
|
|
CG
|
E:ASP531
|
3.6
|
39.4
|
1.0
|
|
C
|
E:ASP673
|
3.8
|
38.7
|
1.0
|
|
CA
|
E:LEU674
|
3.8
|
38.3
|
1.0
|
|
CA
|
E:ASP531
|
3.9
|
40.0
|
1.0
|
|
CA
|
E:ASP673
|
4.0
|
38.7
|
1.0
|
|
CG
|
E:ASP529
|
4.0
|
39.5
|
1.0
|
|
O
|
E:LEU535
|
4.1
|
39.8
|
1.0
|
|
N
|
E:ASP531
|
4.1
|
38.4
|
1.0
|
|
NZ
|
E:LYS106
|
4.1
|
37.4
|
1.0
|
|
OD2
|
E:ASP673
|
4.2
|
39.1
|
1.0
|
|
OD1
|
E:ASN537
|
4.3
|
36.3
|
1.0
|
|
CB
|
E:ASP673
|
4.3
|
39.4
|
1.0
|
|
CB
|
E:ASP531
|
4.4
|
41.3
|
1.0
|
|
N
|
E:LEU530
|
4.5
|
39.6
|
1.0
|
|
CB
|
E:LEU674
|
4.5
|
39.1
|
1.0
|
|
OD2
|
E:ASP531
|
4.6
|
40.0
|
1.0
|
|
CA
|
E:LEU530
|
4.6
|
39.0
|
1.0
|
|
C
|
E:ASP529
|
4.6
|
39.2
|
1.0
|
|
N
|
E:VAL675
|
4.6
|
37.1
|
1.0
|
|
OD2
|
E:ASP529
|
4.6
|
38.0
|
1.0
|
|
O
|
E:ASP673
|
4.8
|
37.9
|
1.0
|
|
CA
|
E:ASP529
|
5.0
|
38.5
|
1.0
|
|
O
|
E:ASP529
|
5.0
|
38.0
|
1.0
|
|
Calcium binding site 10 out
of 14 in 3ala
Go back to
Calcium Binding Sites List in 3ala
Calcium binding site 10 out
of 14 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1764
b:46.4
occ:1.00
|
O
|
E:HOH772
|
2.2
|
43.1
|
1.0
|
|
OD1
|
E:ASN665
|
2.3
|
40.2
|
1.0
|
|
O
|
E:PHE663
|
2.5
|
38.7
|
1.0
|
|
OE2
|
E:GLU572
|
2.6
|
43.4
|
1.0
|
|
OE1
|
E:GLU667
|
2.8
|
40.7
|
1.0
|
|
OE1
|
E:GLU572
|
3.3
|
41.1
|
1.0
|
|
CD
|
E:GLU572
|
3.3
|
42.1
|
1.0
|
|
NZ
|
E:LYS638
|
3.4
|
38.6
|
1.0
|
|
CD
|
E:GLU667
|
3.5
|
43.3
|
1.0
|
|
CG
|
E:ASN665
|
3.6
|
40.7
|
1.0
|
|
OE1
|
E:GLU641
|
3.7
|
41.6
|
1.0
|
|
C
|
E:PHE663
|
3.7
|
39.6
|
1.0
|
|
OE2
|
E:GLU641
|
3.7
|
40.2
|
1.0
|
|
OE2
|
E:GLU667
|
3.9
|
42.0
|
1.0
|
|
CD
|
E:GLU641
|
4.1
|
42.3
|
1.0
|
|
CE
|
E:LYS638
|
4.1
|
38.9
|
1.0
|
|
CD
|
E:LYS638
|
4.3
|
40.1
|
1.0
|
|
CA
|
E:PHE663
|
4.3
|
39.2
|
1.0
|
|
ND2
|
E:ASN665
|
4.3
|
38.3
|
1.0
|
|
CB
|
E:THR635
|
4.4
|
37.9
|
1.0
|
|
CG
|
E:GLU667
|
4.5
|
42.5
|
1.0
|
|
N
|
E:GLN636
|
4.5
|
38.1
|
1.0
|
|
O
|
E:GLN636
|
4.5
|
39.6
|
1.0
|
|
CB
|
E:ASN665
|
4.6
|
40.1
|
1.0
|
|
CB
|
E:GLN636
|
4.6
|
38.7
|
1.0
|
|
N
|
E:ASN665
|
4.7
|
40.1
|
1.0
|
|
CB
|
E:PHE663
|
4.8
|
39.3
|
1.0
|
|
N
|
E:ILE664
|
4.8
|
39.8
|
1.0
|
|
CG
|
E:GLU572
|
4.8
|
39.7
|
1.0
|
|
CG2
|
E:THR635
|
4.9
|
36.0
|
1.0
|
|
Reference:
K.Ernberg,
A.P.Mcgrath,
T.S.Peat,
T.E.Adams,
X.Xiao,
T.Pham,
J.Newman,
I.A.Mcdonald,
C.A.Collyer,
J.M.Guss.
A New Crystal Form of Human Vascular Adhesion Protein 1 Acta Crystallogr.,Sect.F V. 66 1572 2010.
ISSN: ESSN 1744-3091
PubMed: 21139198
DOI: 10.1107/S1744309110041515
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