Atomistry » Calcium » PDB 3atj-3b1t » 3auk
Atomistry »
  Calcium »
    PDB 3atj-3b1t »
      3auk »

Calcium in PDB 3auk: Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S

Enzymatic activity of Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S

All present enzymatic activity of Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S, PDB code: 3auk was solved by C.Angkawidjaja, M.Tayyab, N.Rashid, S.Kanaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.15 / 1.66
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.131, 71.745, 126.262, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19

Other elements in 3auk:

The structure of Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S (pdb code 3auk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S, PDB code: 3auk:

Calcium binding site 1 out of 1 in 3auk

Go back to Calcium Binding Sites List in 3auk
Calcium binding site 1 out of 1 in the Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca391

b:18.0
occ:1.00
O A:GLY287 2.3 14.0 1.0
OE2 A:GLU361 2.3 14.3 1.0
OD2 A:ASP366 2.3 17.6 1.0
O A:PRO367 2.3 15.4 1.0
O A:HOH415 2.4 18.8 1.0
O A:HOH864 2.4 19.8 1.0
CD A:GLU361 3.4 14.7 1.0
C A:GLY287 3.4 17.0 1.0
CG A:ASP366 3.5 16.1 1.0
C A:PRO367 3.6 14.1 1.0
CG A:GLU361 3.8 13.6 1.0
CA A:GLY287 4.0 16.8 1.0
OD1 A:ASP366 4.1 17.5 1.0
NH2 A:ARG272 4.1 16.4 1.0
O A:HOH841 4.2 25.9 1.0
CB A:ASN368 4.4 16.7 1.0
N A:PRO367 4.4 14.4 1.0
O A:HOH870 4.4 27.0 1.0
N A:ASN368 4.4 16.4 1.0
CA A:ASN368 4.4 16.3 1.0
N A:MET288 4.5 15.5 1.0
OE1 A:GLU361 4.5 15.4 1.0
CA A:PRO367 4.5 16.3 1.0
CB A:ASP366 4.5 12.9 1.0
N A:ASN289 4.6 14.4 1.0
O A:HOH975 4.6 38.4 1.0
C A:MET288 4.6 17.2 1.0
C A:ASP366 4.7 16.8 1.0
CA A:MET288 4.7 14.9 1.0
O A:HOH865 4.8 26.6 1.0
OD2 A:ASP358 4.8 17.9 1.0
CD A:PRO367 4.8 16.7 1.0
CG A:PRO367 4.8 17.0 1.0
O A:ASP366 4.9 15.2 1.0
CG A:ASN368 4.9 20.1 1.0

Reference:

M.Tayyab, C.Angkawidjaja, S.Kanaya, N.Rashid. Crystal Structure of A Lipase From Geobacillus Sp. Sbs-4S To Be Published.
Page generated: Sat Jul 13 08:00:16 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy