Calcium in PDB 3bdv: Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution

The structure of Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution, PDB code: 3bdv was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.56 / 1.66
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.655, 93.302, 104.095, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 21.3

The structure of Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution (pdb code 3bdv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution, PDB code: 3bdv:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca191 b:31.0 occ:1.00 O A:HOH342 2.3 46.2 1.0 O A:HOH239 2.4 29.7 1.0 O A:ARG46 2.4 20.0 1.0 O A:HOH268 2.4 34.5 1.0 OE1 A:GLU67 2.5 25.1 1.0 OE2 A:GLU67 2.6 27.2 1.0 CD A:GLU67 2.9 25.5 1.0 C A:ARG46 3.6 23.0 1.0 N A:ARG46 4.1 22.4 1.0 CG A:ARG48 4.2 19.6 1.0 OE1 A:GLN45 4.3 24.2 0.7 CG A:GLU67 4.4 26.6 1.0 CA A:ILE47 4.4 21.1 1.0 CA A:ARG46 4.4 20.7 1.0 N A:ILE47 4.5 21.4 1.0 NE A:ARG48 4.5 19.2 1.0 C A:ILE47 4.7 20.3 1.0 N A:ARG48 4.7 21.6 1.0 O A:HOH235 4.8 28.7 1.0 OE1 A:GLN45 4.9 23.7 0.3 CD A:ARG48 5.0 22.0 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca192 b:48.6 occ:1.00 O A:HOH313 2.3 41.4 1.0 O A:HOH285 2.3 37.3 1.0 O A:HOH265 2.4 34.2 1.0 O2 A:EDO194 2.5 48.4 1.0 O1 A:EDO194 2.5 47.7 1.0 O A:HOH367 2.9 34.6 0.5 C2 A:EDO194 3.4 40.4 1.0 C1 A:EDO194 3.5 50.2 1.0 O A:HOH293 3.9 38.6 1.0 OD2 A:ASP115 4.5 38.7 1.0 O A:HOH367 4.6 27.5 0.5 OD1 A:ASP115 4.6 28.3 1.0 OE1 A:GLU113 4.7 39.5 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative Yden-Like Hydrolase (ECA3091) From Pectobacterium Atrosepticum SCRI1043 at 1.66 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca191 b:29.9 occ:1.00 O2 A:EDO195 2.2 40.6 1.0 O A:ILE185 2.4 24.3 1.0 O A:HOH242 2.4 30.7 1.0 O1 A:EDO195 2.4 34.2 1.0 O B:HOH248 2.5 37.4 1.0 OD2 B:ASP151 2.5 41.7 1.0 C1 A:EDO195 3.1 34.7 1.0 C2 A:EDO195 3.1 33.6 1.0 CG B:ASP151 3.4 26.2 1.0 C A:ILE185 3.5 26.8 1.0 OD1 B:ASP151 3.6 29.3 1.0 CA A:ILE185 4.3 22.2 1.0 N A:LEU186 4.5 23.8 1.0 CA A:LEU186 4.5 23.1 1.0 O A:ILE187 4.6 24.9 1.0 CB A:ILE185 4.6 24.0 1.0 CB B:ASP151 4.8 24.5 1.0 C A:LEU186 4.9 26.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.