Calcium in PDB 3bfm: Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution

The structure of Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution, PDB code: 3bfm was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.55 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.760, 36.560, 71.000, 90.00, 99.28, 90.00
R / Rfree (%)	17.9 / 22.6

The binding sites of Calcium atom in the Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution (pdb code 3bfm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution, PDB code: 3bfm:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca235 b:21.6 occ:1.00 O A:GLN20 2.3 20.4 1.0 OD1 A:ASP21 2.4 25.9 1.0 O A:HOH249 2.4 24.9 1.0 O A:HOH246 2.4 23.6 1.0 OE2 A:GLU42 2.4 22.1 1.0 O A:HOH262 2.5 30.1 1.0 OE1 A:GLU42 2.5 20.7 1.0 CD A:GLU42 2.8 18.0 1.0 C A:GLN20 3.4 23.1 1.0 CG A:ASP21 3.6 34.5 1.0 CA A:ASP21 4.0 22.1 1.0 O A:HOH362 4.0 45.5 1.0 N A:ASP21 4.1 20.6 1.0 NH2 A:ARG49 4.2 25.5 1.0 CG A:GLU42 4.3 18.3 1.0 CB A:ASP21 4.3 25.9 1.0 NH1 A:ARG49 4.4 30.5 1.0 O A:GLY17 4.4 23.1 1.0 N A:GLN20 4.5 21.9 1.0 OD2 A:ASP21 4.5 42.0 1.0 O A:HOH253 4.5 26.5 1.0 CA A:GLN20 4.6 22.9 1.0 CZ A:ARG49 4.6 33.7 1.0 CB A:ALA16 4.9 22.4 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Biotin Protein Ligase-Like Protein of Unknown Function (TM1040_0394) From Silicibacter Sp. TM1040 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca236 b:19.5 occ:0.50 O A:HOH242 2.4 20.7 1.0 O A:ALA36 2.4 25.4 1.0 O A:HOH239 2.4 17.4 0.5 O A:HOH270 2.5 32.3 1.0 C A:ALA36 3.6 25.8 1.0 CB A:ASP35 4.2 35.3 1.0 CA A:GLY37 4.3 23.5 1.0 O A:LEU10 4.3 33.6 1.0 N A:GLY37 4.4 23.4 1.0 O A:ASP35 4.4 27.6 1.0 C A:ASP35 4.4 29.2 1.0 N A:ALA36 4.6 26.9 1.0 OG1 A:THR12 4.6 30.4 1.0 C A:GLY37 4.7 21.2 1.0 CA A:ALA36 4.7 27.8 1.0 OD2 A:ASP35 4.8 53.0 1.0 N A:LEU38 4.8 21.0 1.0 CA A:ASP35 5.0 30.8 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.