Atomistry » Calcium » PDB 3b1u-3biw » 3bi0
Atomistry »
  Calcium »
    PDB 3b1u-3biw »
      3bi0 »

Calcium in PDB 3bi0: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu, PDB code: 3bi0 was solved by J.Lubkowski, C.Barinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.67
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 102.405, 130.797, 159.140, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 21.1

Other elements in 3bi0:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu (pdb code 3bi0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu, PDB code: 3bi0:

Calcium binding site 1 out of 1 in 3bi0

Go back to Calcium Binding Sites List in 3bi0
Calcium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Glu-Glu within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1753

b:17.3
occ:1.00
 OE2 A:GLU436 2.3 20.1 1.0
O A:THR269 2.4 16.9 1.0
O A:TYR272 2.4 17.1 1.0
OG1 A:THR269 2.5 17.2 1.0
OE1 A:GLU433 2.5 16.5 1.0
OE2 A:GLU433 2.5 18.2 1.0
O A:HOH1773 2.5 18.5 1.0
CD A:GLU433 2.8 15.0 1.0
CB A:THR269 3.3 16.0 1.0
C A:THR269 3.3 16.8 1.0
CD A:GLU436 3.4 20.2 1.0
C A:TYR272 3.5 18.4 1.0
OE1 A:GLU436 3.9 18.1 1.0
CA A:THR269 3.9 17.6 1.0
N A:TYR272 4.0 18.8 1.0
CA A:PRO273 4.2 18.8 1.0
N A:ALA274 4.3 19.2 1.0
CB A:ASP266 4.3 18.4 1.0
N A:PRO270 4.3 18.0 1.0
CG A:GLU433 4.3 13.9 1.0
N A:PRO273 4.3 19.6 1.0
CA A:TYR272 4.4 18.5 1.0
C A:PRO273 4.4 19.0 1.0
CA A:PRO270 4.5 18.8 1.0
N A:GLY271 4.5 18.0 1.0
N A:ASP266 4.5 17.0 1.0
O A:ASP266 4.6 18.4 1.0
O A:ALA264 4.6 19.9 1.0
N A:THR269 4.7 17.8 1.0
CG A:GLU436 4.7 14.0 1.0
OD2 A:ASP266 4.7 18.4 1.0
CG2 A:THR269 4.7 16.4 1.0
C A:PRO270 4.7 18.9 1.0
CB A:ALA274 4.9 19.8 1.0
CB A:GLU436 4.9 16.8 1.0
CA A:ASP266 4.9 17.5 1.0
C A:GLY271 5.0 19.9 1.0
CA A:GLU433 5.0 15.3 1.0

Reference:

C.Barinka, K.Hlouchova, M.Rovenska, P.Majer, M.Dauter, N.Hin, Y.S.Ko, T.Tsukamoto, B.S.Slusher, J.Konvalinka, J.Lubkowski. Structural Basis of Interactions Between Human Glutamate Carboxypeptidase II and Its Substrate Analogs J.Mol.Biol. V. 376 1438 2008.
ISSN: ISSN 0022-2836
PubMed: 18234225
DOI: 10.1016/J.JMB.2007.12.066
Page generated: Sat Jul 13 08:17:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy