Calcium in PDB 3bod: Structure of Mouse Beta-Neurexin 1

The structure of Structure of Mouse Beta-Neurexin 1, PDB code: 3bod was solved by J.Koehnke, X.Jin, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.997, 49.137, 63.556, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 22

The binding sites of Calcium atom in the Structure of Mouse Beta-Neurexin 1 (pdb code 3bod). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Mouse Beta-Neurexin 1, PDB code: 3bod:

Calcium binding site 1 out of 1 in the Structure of Mouse Beta-Neurexin 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Mouse Beta-Neurexin 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1 b:13.9 occ:1.00 OD1 A:ASN208 2.2 16.7 1.0 O A:ILE206 2.2 12.8 1.0 O A:VAL154 2.3 12.6 1.0 OD2 A:ASP137 2.4 14.3 1.0 O A:HOH330 2.4 16.1 1.0 C A:VAL154 3.3 13.8 1.0 CG A:ASP137 3.3 14.6 1.0 CG A:ASN208 3.4 15.9 1.0 C A:ILE206 3.4 13.6 1.0 OD1 A:ASP137 3.5 19.2 1.0 CA A:VAL154 4.1 13.1 1.0 N A:ASN208 4.1 12.0 1.0 CB A:ASN208 4.2 13.8 1.0 N A:GLY155 4.2 15.0 1.0 CA A:ILE206 4.2 15.0 1.0 CB A:ILE206 4.3 15.4 1.0 CB A:VAL154 4.3 12.8 1.0 N A:ILE206 4.4 16.8 1.0 CA A:GLY155 4.4 17.4 1.0 N A:PHE207 4.4 12.3 1.0 ND2 A:ASN208 4.4 19.0 1.0 CA A:PHE207 4.5 11.5 1.0 O A:HOH377 4.6 28.0 1.0 CB A:ASP137 4.7 13.2 1.0 CA A:ASN208 4.8 13.0 1.0 CB A:LEU204 4.8 21.2 1.0 C A:PHE207 4.8 12.1 1.0 CG2 A:ILE206 4.9 14.8 1.0 CD1 A:LEU204 4.9 22.8 1.0

J.Koehnke, X.Jin, N.Trbovic, P.S.Katsamba, J.Brasch, G.Ahlsen, P.Scheiffele, B.Honig, A.G.Palmer, L.Shapiro. Crystal Structures of Beta-Neurexin 1 and Beta-Neurexin 2 Ectodomains and Dynamics of Splice Insertion Sequence 4. Structure V. 16 410 2008.
ISSN: ISSN 0969-2126
PubMed: 18334216
DOI: 10.1016/J.STR.2007.12.024