Atomistry » Calcium » PDB 3bje-3bxk » 3bq0
Atomistry »
  Calcium »
    PDB 3bje-3bxk »
      3bq0 »

Calcium in PDB 3bq0: Pre-Insertion Binary Complex of Dbh Dna Polymerase

Enzymatic activity of Pre-Insertion Binary Complex of Dbh Dna Polymerase

All present enzymatic activity of Pre-Insertion Binary Complex of Dbh Dna Polymerase:
2.7.7.7;

Protein crystallography data

The structure of Pre-Insertion Binary Complex of Dbh Dna Polymerase, PDB code: 3bq0 was solved by J.D.Pata, R.C.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 119.416, 119.416, 68.274, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 27.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Pre-Insertion Binary Complex of Dbh Dna Polymerase (pdb code 3bq0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Pre-Insertion Binary Complex of Dbh Dna Polymerase, PDB code: 3bq0:

Calcium binding site 1 out of 1 in 3bq0

Go back to Calcium Binding Sites List in 3bq0
Calcium binding site 1 out of 1 in the Pre-Insertion Binary Complex of Dbh Dna Polymerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Pre-Insertion Binary Complex of Dbh Dna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca355

b:82.2
occ:1.00
O P:HOH11 2.1 50.1 1.0
O5' P:DG10 3.8 49.7 1.0
C3' P:DG10 4.1 50.9 1.0
OP2 P:DG10 4.3 47.4 1.0
OD1 A:ASP7 4.3 56.1 1.0
OD2 A:ASP105 4.4 48.1 1.0
OE2 A:GLU106 4.4 55.9 1.0
OD1 A:ASP105 4.5 47.8 1.0
P P:DG10 4.5 48.8 1.0
O3' P:DG10 4.6 52.2 1.0
OD2 A:ASP7 4.6 59.0 1.0
NZ A:LYS160 4.7 56.9 1.0
CG A:ASP105 4.8 48.0 1.0
OP1 P:DG10 4.8 48.8 1.0
C5' P:DG10 4.9 50.4 1.0
CG A:ASP7 4.9 55.4 1.0
C2' P:DG10 4.9 50.1 1.0
CD A:GLU106 5.0 53.0 1.0
O A:HOH416 5.0 43.5 1.0

Reference:

R.C.Wilson, J.D.Pata. Structural Insights Into the Generation of Single-Base Deletions By the Y Family Dna Polymerase Dbh. Mol.Cell V. 29 767 2008.
ISSN: ISSN 1097-2765
PubMed: 18374650
DOI: 10.1016/J.MOLCEL.2008.01.014
Page generated: Sat Dec 12 04:06:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy