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    PDB 158d-1ajq
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      3bdc
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    PDB 5bca-8tln
    PDB 966c-9rnt

Calcium in the structure of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism (pdb 3bvc)

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The binding sites of Calcium atom in the structure of Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism (pdb code 3bvc). This binding sites where shown with 5.0 Angstroms radius around Calcium atom.
The 3bvc structure was solved by Y.PATSKOVSKY, R.TORO, A.J.MEYER, M.RUTTER, M.IIZUKA, M.MALETIC, D.SMITH, S.WASSERMAN, J.M.SAUDER, S.K.BURLEY, S.C.ALMO, NEW YORK SGX RESEARCHCENTER FOR STRUCTURAL GENOMICS (NYSGXRC), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:

*Resolution (A)*	20.0-2.8
*Space group*	P2₁2₁2
*a (A)*	96.405
*b (A)*	101.973
*c (A)*	76.506
*alpha (°)*	90.00
*beta (°)*	90.00
*gamma (°)*	90.00
*R_factor (%)*	25.5
*R_free (%)*	29.8

Calcium Binding Sites:

Calcium binding site 1 out of 4 in 3bvc

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stereopicture of Calcium binding site 1 out of 4 in 3bvc

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Calcium in the PDB 3bvc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Calcium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp27, A: Glu29,

conact list:

Atom	Atom	Distance (A)
Ca	CB A:*Asp*27	4.90
Ca	OD2 A:*Asp*27	2.72
Ca	OD1 A:*Asp*27	3.47
Ca	CG A:*Asp*27	3.47
Ca	OE1 A:*Glu*29	3.61
Ca	CB A:*Glu*29	4.65
Ca	CD A:*Glu*29	4.77

interactive model:

Calcium binding site 2 out of 4 in 3bvc

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stereopicture of Calcium binding site 2 out of 4 in 3bvc

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Calcium in the PDB 3bvc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Calcium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu112, A: Glu195,

conact list:

Atom	Atom	Distance (A)
Ca	OE1 A:*Glu*112	2.67
Ca	OE2 A:*Glu*112	3.61
Ca	CD A:*Glu*112	3.45
Ca	CG A:*Glu*112	4.76
Ca	OE1 A:*Glu*195	2.64
Ca	OE2 A:*Glu*195	4.22
Ca	CD A:*Glu*195	3.59
Ca	CG A:*Glu*195	4.53

interactive model:

Calcium binding site 3 out of 4 in 3bvc

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stereopicture of Calcium binding site 3 out of 4 in 3bvc

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Calcium in the PDB 3bvc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Calcium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu32, A: Ser133,

conact list:

Atom	Atom	Distance (A)
Ca	OE1 A:*Glu*32	3.18
Ca	OE2 A:*Glu*32	3.20
Ca	CD A:*Glu*32	3.57
Ca	OG A:*Ser*133	4.86

interactive model:

Calcium binding site 4 out of 4 in 3bvc

Click to enlarge

stereopicture of Calcium binding site 4 out of 4 in 3bvc

Click to enlarge

Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Calcium in the PDB 3bvc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Calcium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp94, B: Asp96,

conact list:

Atom	Atom	Distance (A)
Ca	CB B:*Asp*94	4.96
Ca	OD2 B:*Asp*94	2.95
Ca	OD1 B:*Asp*94	3.19
Ca	CG B:*Asp*94	3.45
Ca	N B:*Asp*96	4.96
Ca	OD2 B:*Asp*96	4.73
Ca	OD1 B:*Asp*96	4.53
Ca	CG B:*Asp*96	4.63
Ca	CA B:*Asp*96	4.80