Calcium in PDB 3by6: Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni

The structure of Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni, PDB code: 3by6 was solved by R.Zhang, L.Volkart, M.Gu, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.78 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.434, 103.893, 131.393, 90.00, 102.85, 90.00
R / Rfree (%)	23.9 / 27.8

The binding sites of Calcium atom in the Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni (pdb code 3by6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni, PDB code: 3by6:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:44.8 occ:1.00 OG A:SER34 3.6 31.3 1.0 NE A:ARG36 3.7 40.2 1.0 O A:HOH222 3.7 33.4 1.0 CB A:SER34 4.0 31.9 1.0 CB A:ARG36 4.2 32.1 1.0 NH2 A:ARG36 4.3 42.6 1.0 CD A:ARG36 4.4 35.0 1.0 CZ A:ARG36 4.5 41.1 1.0 CG A:ARG36 4.9 34.6 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:74.8 occ:1.00 O B:HOH323 3.5 48.4 1.0 N B:TYR10 3.6 40.1 1.0 CD1 B:TYR10 3.7 44.1 1.0 CE B:LYS51 3.8 54.2 1.0 CG2 B:THR48 3.8 40.0 1.0 N B:VAL9 3.8 40.6 1.0 CB B:TYR10 3.9 40.9 1.0 OG1 B:THR48 4.2 42.4 1.0 CG B:TYR10 4.3 42.2 1.0 CB B:VAL9 4.4 39.7 1.0 CA B:TYR10 4.4 40.1 1.0 CA B:VAL9 4.4 39.9 1.0 NZ B:LYS51 4.4 55.3 1.0 CB B:PRO8 4.5 40.9 1.0 C B:VAL9 4.5 40.3 1.0 C B:PRO8 4.5 40.7 1.0 CB B:THR48 4.6 41.6 1.0 CE1 B:TYR10 4.7 45.0 1.0 CA B:PRO8 4.7 41.0 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca202 b:48.9 occ:1.00 OG C:SER34 3.6 40.0 1.0 NH1 C:ARG36 3.9 39.4 1.0 O C:HOH232 4.0 37.3 1.0 CB C:SER34 4.0 38.5 1.0 CD C:ARG36 4.0 36.8 1.0 CB C:ARG36 4.2 37.3 1.0 OE2 C:GLU37 4.4 47.4 1.0 CG C:ARG36 4.6 37.5 1.0 CD C:GLU37 4.7 44.0 1.0 CZ C:ARG36 4.7 38.9 1.0 NE C:ARG36 4.8 37.1 1.0 O C:HOH230 4.8 42.6 1.0 CG C:GLU37 4.9 40.8 1.0

R.Zhang, L.Volkart, M.Gu, A.Joachimiak. The Crystal Structure of A Transcriptional Regulator From Oenococcus Oeni. To Be Published.