Atomistry » Calcium » PDB 3bxk-3cfr » 3c9i
Atomistry »
  Calcium »
    PDB 3bxk-3cfr »
      3c9i »

Calcium in PDB 3c9i: Structure of P22 Tail-Needle GP26 Bound to Xenon Gas

Protein crystallography data

The structure of Structure of P22 Tail-Needle GP26 Bound to Xenon Gas, PDB code: 3c9i was solved by G.Cingolani, A.S.Olia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.539, 114.531, 172.045, 90.00, 91.01, 90.00
R / Rfree (%) 23.4 / 26.9

Other elements in 3c9i:

The structure of Structure of P22 Tail-Needle GP26 Bound to Xenon Gas also contains other interesting chemical elements:

Xenon (Xe) 14 atoms
Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of P22 Tail-Needle GP26 Bound to Xenon Gas (pdb code 3c9i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of P22 Tail-Needle GP26 Bound to Xenon Gas, PDB code: 3c9i:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3c9i

Go back to Calcium Binding Sites List in 3c9i
Calcium binding site 1 out of 2 in the Structure of P22 Tail-Needle GP26 Bound to Xenon Gas


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of P22 Tail-Needle GP26 Bound to Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1

b:21.4
occ:1.00
OD1 C:ASN1063 2.3 23.4 1.0
OE1 A:GLN1066 2.3 39.3 1.0
OD1 B:ASN1063 2.3 15.2 1.0
OD1 A:ASN1063 2.4 25.1 1.0
OE1 C:GLN1066 2.4 28.9 1.0
OE1 B:GLN1066 2.5 20.0 1.0
CD A:GLN1066 3.4 28.9 1.0
CG C:ASN1063 3.5 12.4 1.0
CD C:GLN1066 3.5 28.6 1.0
CG B:ASN1063 3.5 10.9 1.0
CG A:ASN1063 3.6 7.0 1.0
CD B:GLN1066 3.6 18.0 1.0
NE2 A:GLN1066 4.0 8.9 1.0
NE2 C:GLN1066 4.1 11.6 1.0
NE2 B:GLN1066 4.2 23.3 1.0
ND2 C:ASN1063 4.2 19.2 1.0
CA B:ASN1063 4.3 23.5 1.0
CA C:ASN1063 4.3 17.8 1.0
ND2 A:ASN1063 4.4 12.0 1.0
ND2 B:ASN1063 4.4 17.8 1.0
CB C:ASN1063 4.4 10.4 1.0
CA A:ASN1063 4.4 18.5 1.0
CB B:ASN1063 4.5 10.2 1.0
CB A:ASN1063 4.6 10.7 1.0
CG A:GLN1066 4.6 35.1 1.0
CG C:GLN1066 4.7 26.8 1.0
CG B:GLN1066 4.8 22.7 1.0
CB B:GLN1066 4.8 23.5 1.0
CB A:GLN1066 4.8 22.0 1.0
CB C:GLN1066 4.8 23.0 1.0
N B:ASN1063 4.9 28.2 1.0
N C:ASN1063 5.0 17.5 1.0

Calcium binding site 2 out of 2 in 3c9i

Go back to Calcium Binding Sites List in 3c9i
Calcium binding site 2 out of 2 in the Structure of P22 Tail-Needle GP26 Bound to Xenon Gas


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of P22 Tail-Needle GP26 Bound to Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca3

b:23.7
occ:1.00
OD1 F:ASN1063 2.2 24.5 1.0
OD1 D:ASN1063 2.3 24.2 1.0
OE1 E:GLN1066 2.4 27.7 1.0
OE1 F:GLN1066 2.4 25.3 1.0
OD1 E:ASN1063 2.4 27.8 1.0
OE1 D:GLN1066 2.4 23.3 1.0
CG F:ASN1063 3.4 16.1 1.0
CG D:ASN1063 3.4 18.8 1.0
CD E:GLN1066 3.5 25.2 1.0
CD F:GLN1066 3.6 22.4 1.0
CD D:GLN1066 3.6 18.0 1.0
CG E:ASN1063 3.6 22.6 1.0
NE2 E:GLN1066 4.0 18.8 1.0
NE2 D:GLN1066 4.1 22.9 1.0
ND2 F:ASN1063 4.1 22.8 1.0
ND2 D:ASN1063 4.2 21.6 1.0
NE2 F:GLN1066 4.2 19.6 1.0
CA F:ASN1063 4.3 17.1 1.0
CB F:ASN1063 4.4 12.6 1.0
CA E:ASN1063 4.4 22.6 1.0
CA D:ASN1063 4.4 20.2 1.0
ND2 E:ASN1063 4.5 35.8 1.0
CB D:ASN1063 4.5 21.4 1.0
CB E:ASN1063 4.6 24.0 1.0
CG E:GLN1066 4.7 19.9 1.0
CG F:GLN1066 4.7 23.5 1.0
CG D:GLN1066 4.8 18.1 1.0
N F:ASN1063 4.8 21.8 1.0
CB F:GLN1066 4.9 20.4 1.0
CB E:GLN1066 4.9 25.0 1.0
N D:ASN1063 5.0 27.8 1.0
CG F:LYS1062 5.0 33.0 1.0
CB D:GLN1066 5.0 22.4 1.0
N E:ASN1063 5.0 18.9 1.0

Reference:

A.S.Olia, S.Casjens, G.Cingolani. Structural Plasticity of the Phage P22 Tail Needle GP26 Probed with Xenon Gas. Protein Sci. V. 18 537 2009.
ISSN: ISSN 0961-8368
PubMed: 19241380
DOI: 10.1002/PRO.53
Page generated: Sat Dec 12 04:07:21 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy