Atomistry » Calcium » PDB 3cga-3ctz » 3cqo
Atomistry »
  Calcium »
    PDB 3cga-3ctz »
      3cqo »

Calcium in PDB 3cqo: Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum

Protein crystallography data

The structure of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum, PDB code: 3cqo was solved by M.A.Bianchet, L.M.Amzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.15 / 2.32
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 88.135, 88.135, 230.169, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 24.5

Other elements in 3cqo:

The structure of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum (pdb code 3cqo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum, PDB code: 3cqo:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 3cqo

Go back to Calcium Binding Sites List in 3cqo
Calcium binding site 1 out of 6 in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4001

b:21.4
occ:1.00
 OE1 A:GLU140 2.2 22.0 1.0
O A:CYS139 2.3 19.8 1.0
O A:ASN32 2.4 22.5 1.0
O A:SER41 2.4 20.1 1.0
O A:ASN27 2.4 19.2 1.0
OD1 A:ASP30 2.5 23.2 1.0
OG A:SER41 2.5 16.2 1.0
CG A:ASP30 3.4 24.7 1.0
CD A:GLU140 3.4 21.2 1.0
C A:CYS139 3.5 18.8 1.0
C A:SER41 3.5 19.1 1.0
C A:ASN32 3.5 23.4 1.0
CB A:SER41 3.6 17.1 1.0
C A:ASN27 3.6 19.9 1.0
OD2 A:ASP30 3.8 23.3 1.0
CA A:SER41 4.0 18.8 1.0
N A:ASN32 4.1 24.1 1.0
CB A:GLU140 4.1 16.7 1.0
CA A:ASN32 4.2 23.7 1.0
CB A:ASN32 4.2 24.3 1.0
CA A:GLU140 4.2 17.9 1.0
CA A:ALA28 4.3 19.4 1.0
N A:GLU140 4.3 18.3 1.0
OE2 A:GLU140 4.3 22.6 1.0
CG A:GLU140 4.3 18.1 1.0
N A:ALA28 4.4 19.3 1.0
CA A:CYS139 4.5 20.3 1.0
C A:ALA28 4.5 19.7 1.0
CA A:ASN27 4.6 20.0 1.0
N A:ARG33 4.6 23.9 1.0
N A:CYS42 4.6 19.7 1.0
N A:ASP30 4.6 19.3 1.0
CB A:ASP30 4.7 20.8 1.0
O A:ALA28 4.8 19.1 1.0
CB A:ASN27 4.9 19.3 1.0
CA A:ARG33 4.9 24.8 1.0
N A:ILE29 5.0 18.7 1.0
N A:GLY31 5.0 19.4 1.0

Calcium binding site 2 out of 6 in 3cqo

Go back to Calcium Binding Sites List in 3cqo
Calcium binding site 2 out of 6 in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4004

b:24.4
occ:1.00
 O A:CYS283 2.3 26.3 1.0
OD1 A:ASP176 2.3 25.7 1.0
O A:ASN178 2.4 20.6 1.0
O A:ASN173 2.4 21.8 1.0
OE1 A:GLU284 2.4 20.7 1.0
OG A:SER187 2.4 20.4 1.0
O A:SER187 2.5 25.6 1.0
CG A:ASP176 3.3 24.6 1.0
C A:CYS283 3.5 25.4 1.0
C A:ASN178 3.5 23.4 1.0
OD2 A:ASP176 3.5 23.2 1.0
CB A:SER187 3.5 21.8 1.0
C A:SER187 3.6 24.6 1.0
C A:ASN173 3.6 20.6 1.0
CD A:GLU284 3.7 23.6 1.0
CA A:SER187 4.1 23.9 1.0
N A:ASN178 4.2 23.3 1.0
CB A:GLU284 4.2 22.5 1.0
CA A:ASN178 4.2 22.9 1.0
CB A:ASN178 4.3 23.2 1.0
CA A:GLU284 4.3 23.3 1.0
N A:GLU284 4.3 24.3 1.0
CA A:ALA174 4.4 20.7 1.0
CA A:CYS283 4.4 26.0 1.0
N A:ALA174 4.5 21.1 1.0
CG A:GLU284 4.5 20.7 1.0
OE2 A:GLU284 4.5 22.8 1.0
CA A:ASN173 4.6 19.3 1.0
N A:ASP176 4.6 22.9 1.0
CB A:ASP176 4.6 23.7 1.0
N A:GLN179 4.6 24.6 1.0
C A:ALA174 4.6 21.2 1.0
N A:CYS188 4.8 26.1 1.0
CA A:GLN179 4.9 25.5 1.0
CB A:ASN173 4.9 17.4 1.0
N A:ILE175 5.0 21.1 1.0
O A:ALA174 5.0 21.6 1.0

Calcium binding site 3 out of 6 in 3cqo

Go back to Calcium Binding Sites List in 3cqo
Calcium binding site 3 out of 6 in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca4002

b:21.0
occ:1.00
 O B:CYS139 2.2 24.1 1.0
O B:ASN32 2.3 26.1 1.0
OE1 B:GLU140 2.4 19.4 1.0
O B:ASN27 2.4 21.2 1.0
OG B:SER41 2.4 21.8 1.0
O B:SER41 2.5 21.5 1.0
OD1 B:ASP30 2.5 17.4 1.0
CG B:ASP30 3.4 19.8 1.0
C B:CYS139 3.4 23.9 1.0
C B:ASN32 3.5 23.9 1.0
CD B:GLU140 3.5 21.6 1.0
C B:SER41 3.5 22.2 1.0
CB B:SER41 3.6 20.6 1.0
C B:ASN27 3.6 19.7 1.0
OD2 B:ASP30 3.7 21.3 1.0
CB B:GLU140 3.9 22.5 1.0
CA B:SER41 4.0 21.3 1.0
CA B:GLU140 4.1 21.7 1.0
N B:ASN32 4.1 19.1 1.0
N B:GLU140 4.2 22.1 1.0
CA B:ASN32 4.3 21.0 1.0
CG B:GLU140 4.3 20.5 1.0
CA B:ALA28 4.3 20.1 1.0
CB B:ASN32 4.4 21.8 1.0
N B:ALA28 4.4 20.4 1.0
OE2 B:GLU140 4.4 21.1 1.0
CA B:CYS139 4.5 25.3 1.0
N B:ARG33 4.5 25.2 1.0
C B:ALA28 4.5 19.5 1.0
CA B:ASN27 4.6 19.7 1.0
CB B:ASP30 4.7 17.3 1.0
N B:ASP30 4.7 16.4 1.0
N B:CYS42 4.7 22.0 1.0
CA B:ARG33 4.7 24.8 1.0
CB B:ASN27 4.8 18.1 1.0
O B:ALA28 4.8 19.1 1.0

Calcium binding site 4 out of 6 in 3cqo

Go back to Calcium Binding Sites List in 3cqo
Calcium binding site 4 out of 6 in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca4006

b:27.5
occ:1.00
 OG B:SER187 2.1 24.3 1.0
O B:CYS283 2.3 27.0 1.0
OD1 B:ASP176 2.4 24.9 1.0
O B:ASN173 2.4 23.6 1.0
O B:ASN178 2.4 29.2 1.0
OE1 B:GLU284 2.5 22.5 1.0
O B:SER187 2.5 30.5 1.0
CG B:ASP176 3.3 24.7 1.0
CB B:SER187 3.4 28.1 1.0
OD2 B:ASP176 3.5 26.3 1.0
C B:SER187 3.5 30.0 1.0
C B:CYS283 3.5 27.3 1.0
C B:ASN173 3.6 24.0 1.0
C B:ASN178 3.6 28.0 1.0
CD B:GLU284 3.7 23.2 1.0
CA B:SER187 3.9 28.7 1.0
N B:ASN178 4.2 26.5 1.0
CB B:GLU284 4.2 25.2 1.0
CA B:ASN178 4.2 26.7 1.0
CB B:ASN178 4.3 25.9 1.0
CA B:ALA174 4.3 23.5 1.0
CA B:GLU284 4.4 24.8 1.0
N B:GLU284 4.4 25.3 1.0
N B:ALA174 4.4 24.4 1.0
CA B:CYS283 4.5 29.2 1.0
CG B:GLU284 4.5 22.8 1.0
CA B:ASN173 4.5 24.0 1.0
OE2 B:GLU284 4.6 23.1 1.0
CB B:ASP176 4.6 21.1 1.0
C B:ALA174 4.6 22.7 1.0
N B:GLN179 4.7 29.5 1.0
N B:ASP176 4.7 20.0 1.0
N B:CYS188 4.7 29.9 1.0
CB B:ASN173 4.8 25.6 1.0
O B:ALA174 4.9 22.5 1.0
CG B:ASN178 4.9 24.6 1.0
CA B:GLN179 4.9 30.7 1.0

Calcium binding site 5 out of 6 in 3cqo

Go back to Calcium Binding Sites List in 3cqo
Calcium binding site 5 out of 6 in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca4003

b:17.1
occ:1.00
 OE1 C:GLU140 2.3 19.7 1.0
O C:ASN27 2.3 17.3 1.0
OD1 C:ASP30 2.4 26.7 1.0
O C:SER41 2.4 18.6 1.0
O C:ASN32 2.4 22.1 1.0
O C:CYS139 2.4 21.7 1.0
OG C:SER41 2.6 18.9 1.0
CG C:ASP30 3.3 25.0 1.0
C C:ASN27 3.5 17.6 1.0
C C:SER41 3.5 18.8 1.0
CD C:GLU140 3.5 19.6 1.0
C C:ASN32 3.6 23.1 1.0
C C:CYS139 3.6 22.1 1.0
CB C:SER41 3.7 18.1 1.0
OD2 C:ASP30 3.7 23.2 1.0
CA C:SER41 4.0 18.7 1.0
N C:ASN32 4.1 21.8 1.0
CB C:GLU140 4.1 20.6 1.0
CA C:ASN32 4.2 22.1 1.0
CB C:ASN32 4.2 21.5 1.0
CA C:GLU140 4.2 22.6 1.0
CA C:ALA28 4.3 18.8 1.0
N C:ALA28 4.3 17.3 1.0
N C:GLU140 4.3 21.9 1.0
OE2 C:GLU140 4.4 20.7 1.0
CG C:GLU140 4.4 18.4 1.0
C C:ALA28 4.5 18.8 1.0
CA C:ASN27 4.5 18.7 1.0
N C:ASP30 4.5 20.8 1.0
CB C:ASP30 4.6 21.0 1.0
CA C:CYS139 4.6 22.9 1.0
N C:CYS42 4.6 19.5 1.0
N C:ARG33 4.7 23.2 1.0
CB C:ASN27 4.7 18.5 1.0
O C:ALA28 4.8 20.2 1.0
N C:ILE29 4.8 18.9 1.0
N C:GLY31 4.9 22.0 1.0
CA C:ASP30 5.0 20.3 1.0
CA C:ARG33 5.0 23.3 1.0

Calcium binding site 6 out of 6 in 3cqo

Go back to Calcium Binding Sites List in 3cqo
Calcium binding site 6 out of 6 in the Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca4005

b:25.5
occ:1.00
 O C:ASN173 2.3 24.0 1.0
O C:CYS283 2.3 27.4 1.0
OD1 C:ASP176 2.4 23.6 1.0
O C:ASN178 2.4 25.8 1.0
OE1 C:GLU284 2.4 33.6 1.0
OG C:SER187 2.5 22.1 1.0
O C:SER187 2.5 21.6 1.0
CG C:ASP176 3.4 21.8 1.0
C C:CYS283 3.4 25.4 1.0
CB C:SER187 3.5 22.8 1.0
C C:ASN173 3.5 23.2 1.0
C C:SER187 3.6 22.8 1.0
C C:ASN178 3.6 24.9 1.0
CD C:GLU284 3.6 33.5 1.0
OD2 C:ASP176 3.8 22.1 1.0
CA C:SER187 4.0 22.2 1.0
CB C:GLU284 4.1 27.5 1.0
CA C:GLU284 4.2 25.3 1.0
CA C:ALA174 4.2 22.5 1.0
N C:GLU284 4.2 25.1 1.0
N C:ASN178 4.2 23.4 1.0
N C:ALA174 4.3 23.3 1.0
CA C:ASN178 4.3 23.2 1.0
CG C:GLU284 4.4 30.1 1.0
CA C:CYS283 4.4 25.2 1.0
C C:ALA174 4.4 23.6 1.0
CB C:ASN178 4.5 23.3 1.0
CA C:ASN173 4.5 23.8 1.0
OE2 C:GLU284 4.6 34.1 1.0
N C:ASP176 4.6 22.8 1.0
CB C:ASP176 4.6 21.3 1.0
N C:GLN179 4.7 25.5 1.0
O C:ALA174 4.7 25.0 1.0
CB C:ASN173 4.7 22.2 1.0
N C:CYS188 4.8 22.7 1.0
CA C:GLN179 4.9 25.4 1.0
N C:ILE175 4.9 24.9 1.0

Reference:

M.A.Bianchet, E.W.Odom, G.R.Vasta, L.M.Amzel. Structure and Specificity of A Binary Tandem Domain F-Lectin From Striped Bass (Morone Saxatilis). J.Mol.Biol. V. 401 239 2010.
ISSN: ISSN 0022-2836
PubMed: 20561530
DOI: 10.1016/J.JMB.2010.06.018
Page generated: Sat Jul 13 08:44:18 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy