Atomistry » Calcium » PDB 3cu2-3dc0 » 3cu2
Atomistry »
  Calcium »
    PDB 3cu2-3dc0 »
      3cu2 »

Calcium in PDB 3cu2: Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution

Enzymatic activity of Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution

All present enzymatic activity of Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution:
5.1.3.1;

Protein crystallography data

The structure of Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution, PDB code: 3cu2 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.92 / 1.91
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 85.010, 85.010, 140.160, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 20.5

Other elements in 3cu2:

The structure of Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution also contains other interesting chemical elements:

Nickel (Ni) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution (pdb code 3cu2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution, PDB code: 3cu2:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3cu2

Go back to Calcium Binding Sites List in 3cu2
Calcium binding site 1 out of 2 in the Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca237

b:36.3
occ:1.00
 O A:PHE220 2.4 28.1 1.0
O A:HOH345 2.4 36.6 1.0
O A:HOH295 2.5 27.8 1.0
O A:HOH388 2.6 43.8 1.0
O A:HOH305 2.8 29.4 1.0
C A:PHE220 3.5 26.9 1.0
O A:GLY222 4.0 36.0 1.0
O B:HOH320 4.2 24.6 1.0
CB A:PHE220 4.3 24.2 1.0
CA A:PHE220 4.3 22.6 1.0
N A:GLY222 4.3 29.7 1.0
O A:HOH336 4.5 34.8 1.0
O A:HOH263 4.5 20.5 1.0
N A:SER221 4.5 26.3 1.0
CA A:SER221 4.6 26.2 1.0
C A:GLY222 4.7 31.8 1.0
O A:HOH266 4.8 20.9 1.0
O A:HOH386 5.0 43.6 1.0

Calcium binding site 2 out of 2 in 3cu2

Go back to Calcium Binding Sites List in 3cu2
Calcium binding site 2 out of 2 in the Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT at 1.91 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca237

b:34.9
occ:1.00
 O B:HOH382 2.0 35.5 1.0
O B:HOH354 2.3 30.3 1.0
O B:PHE220 2.3 20.7 1.0
O B:HOH313 2.5 23.7 1.0
O B:HOH365 3.0 31.8 1.0
C B:PHE220 3.5 22.0 1.0
O B:GLY222 3.7 29.7 1.0
O B:HOH297 4.2 21.3 1.0
N B:GLY222 4.2 27.8 1.0
CA B:PHE220 4.2 19.2 1.0
CB B:PHE220 4.3 17.4 1.0
O B:HOH431 4.3 43.3 1.0
O B:HOH411 4.4 39.8 1.0
N B:SER221 4.4 22.5 1.0
C B:GLY222 4.5 27.7 1.0
O B:HOH284 4.5 18.7 1.0
CA B:SER221 4.6 24.6 1.0
CA B:GLY222 4.9 27.1 1.0
C B:SER221 4.9 28.1 1.0
O B:HOH290 5.0 19.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 13 08:47:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy