Atomistry » Calcium » PDB 3dcq-3dsw » 3de1
Atomistry »
  Calcium »
    PDB 3dcq-3dsw »
      3de1 »

Calcium in PDB 3de1: Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline

Enzymatic activity of Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline

All present enzymatic activity of Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline:
3.4.21.64;

Protein crystallography data

The structure of Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline, PDB code: 3de1 was solved by E.Pechkova, S.K.Tripathi, C.Nicolini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.84 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.669, 67.669, 101.625, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline (pdb code 3de1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline, PDB code: 3de1:

Calcium binding site 1 out of 1 in 3de1

Go back to Calcium Binding Sites List in 3de1
Calcium binding site 1 out of 1 in the Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Proteinase K By Lb Nanotemplate Method After the Third Step of High X-Ray Dose on Esrf ID23-1 Beamline within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca281

b:41.1
occ:1.00
 O X:HOH284 0.2 2.0 1.0
O X:VAL177 2.6 2.2 1.0
OD2 X:ASP200 2.7 4.3 1.0
OG1 X:THR179 2.8 2.0 1.0
O X:GLU174 2.9 2.6 1.0
O X:HOH394 3.0 29.2 1.0
O X:HOH321 3.1 13.3 1.0
O X:VAL198 3.2 3.9 1.0
CB X:THR179 3.5 2.0 1.0
C X:VAL177 3.6 4.5 1.0
N X:THR179 3.7 2.0 1.0
O X:PRO175 3.7 5.3 1.0
CG X:ASP200 3.7 4.9 1.0
CG2 X:VAL198 3.8 10.2 1.0
C X:GLU174 3.9 3.6 1.0
C X:PRO175 4.0 4.7 1.0
OD1 X:ASP200 4.1 5.5 1.0
CA X:PRO175 4.1 4.8 1.0
O X:ALA172 4.1 2.8 1.0
CA X:THR179 4.2 2.0 1.0
N X:VAL177 4.3 4.8 1.0
C X:VAL198 4.3 4.9 1.0
C X:CYS178 4.4 3.6 1.0
N X:PRO175 4.4 4.6 1.0
CG2 X:VAL177 4.4 6.7 1.0
N X:CYS178 4.5 4.0 1.0
CA X:VAL177 4.5 4.1 1.0
CA X:CYS178 4.5 3.7 1.0
CG2 X:THR179 4.8 2.0 1.0
O X:HOH374 4.8 15.6 1.0
N X:SER176 4.9 3.8 1.0
CA X:VAL198 5.0 5.4 1.0
CB X:VAL198 5.0 7.5 1.0

Reference:

E.Pechkova, S.Tripathi, R.B.Ravelli, S.Mcsweeney, C.Nicolini. Radiation Stability of Proteinase K Crystals Grown By Lb Nanotemplate Method J.Struct.Biol. V. 168 409 2009.
ISSN: ISSN 1047-8477
PubMed: 19686853
DOI: 10.1016/J.JSB.2009.08.005
Page generated: Sat Jul 13 08:59:08 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy