Calcium in PDB 3dpr: Human Rhinovirus 2 Bound to A Concatamer of the Vldl Receptor Module V3

The structure of Human Rhinovirus 2 Bound to A Concatamer of the Vldl Receptor Module V3, PDB code: 3dpr was solved by J.Querol-Audi, J.Pous, I.Fita, N.Verdaguer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 3.50
Space group	P 43 21 2 4
Cell size a, b, c (Å), α, β, γ (°)	498.117, 498.117, 658.425, 90.00, 90.00, 90.00
R / Rfree (%)	42.5 / 44.1

The binding sites of Calcium atom in the Human Rhinovirus 2 Bound to A Concatamer of the Vldl Receptor Module V3 (pdb code 3dpr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human Rhinovirus 2 Bound to A Concatamer of the Vldl Receptor Module V3, PDB code: 3dpr:

Calcium binding site 1 out of 1 in the Human Rhinovirus 2 Bound to A Concatamer of the Vldl Receptor Module V3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Rhinovirus 2 Bound to A Concatamer of the Vldl Receptor Module V3 within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca50 b:22.5 occ:1.00 O E:GLU27 2.1 22.5 1.0 OD2 E:ASP35 2.4 22.5 1.0 OD1 E:ASP25 2.5 22.5 1.0 O E:TRP22 2.8 22.5 1.0 CB E:TRP22 2.9 22.5 1.0 OD1 E:ASP29 2.9 22.5 1.0 C E:GLU27 3.0 22.5 1.0 OE2 E:GLU36 3.4 22.5 1.0 CA E:TRP22 3.5 22.5 1.0 C E:TRP22 3.5 22.5 1.0 CG E:ASP29 3.6 22.5 1.0 CG E:ASP25 3.6 22.5 1.0 CG E:ASP35 3.7 22.5 1.0 N E:ASP29 3.8 22.5 1.0 CA E:GLU27 3.9 22.5 1.0 CB E:ASP29 3.9 22.5 1.0 N E:ASN28 3.9 22.5 1.0 CB E:GLU27 4.0 22.5 1.0 N E:GLU27 4.0 22.5 1.0 CG E:TRP22 4.0 22.5 1.0 CA E:ASN28 4.2 22.5 1.0 CD E:GLU36 4.3 22.5 1.0 CG E:GLU36 4.3 22.5 1.0 OD2 E:ASP25 4.3 22.5 1.0 C E:ASN28 4.3 22.5 1.0 O E:ASP35 4.4 22.5 1.0 CB E:ASP35 4.4 22.5 1.0 OD2 E:ASP29 4.5 22.5 1.0 CA E:ASP29 4.5 22.5 1.0 CD1 E:TRP22 4.6 22.5 1.0 N E:ASP25 4.6 22.5 1.0 OD1 E:ASP35 4.6 22.5 1.0 CB E:ASP25 4.7 22.5 1.0 N E:ARG23 4.7 22.5 1.0 N E:TRP22 4.9 22.5 1.0 N E:CYS24 4.9 22.5 1.0 C E:ASP35 5.0 22.5 1.0

J.Querol-Audi, T.Konecsni, J.Pous, O.Carugo, I.Fita, N.Verdaguer, D.Blaas. Minor Group Human Rhinovirus-Receptor Interactions: Geometry of Multimodular Attachment and Basis of Recognition Febs Lett. V. 583 235 2009.
ISSN: ISSN 0014-5793
PubMed: 19073182
DOI: 10.1016/J.FEBSLET.2008.12.014