Calcium in PDB 3dss: Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)

All present enzymatic activity of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig):
2.5.1.60;

The structure of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig), PDB code: 3dss was solved by Z.Guo, S.Yu, R.S.Goody, K.Alexandrov, W.Blankenfeldt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.13 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.748, 90.628, 114.068, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 19.4

The structure of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Calcium atom in the Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) (pdb code 3dss). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Rabggtase(Delta Lrr; Delta Ig), PDB code: 3dss:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca333 b:34.9 occ:1.00 O B:HOH641 2.2 44.0 1.0 O B:HOH476 2.3 44.8 1.0 O B:HOH516 2.3 38.9 1.0 OD1 B:ASP284 2.4 26.9 1.0 O B:HOH640 2.4 38.2 1.0 OD1 B:ASP280 2.5 20.2 1.0 OD2 B:ASP280 2.5 16.5 1.0 CG B:ASP280 2.8 17.3 1.0 CG B:ASP284 3.4 25.0 1.0 CB B:ASP284 3.8 23.3 1.0 CB B:ASP280 4.3 15.2 1.0 O B:HOH409 4.4 39.1 1.0 OD2 B:ASP284 4.5 27.0 1.0 CG B:ARG281 4.5 24.1 1.0 O B:HOH365 4.6 24.6 1.0 O B:HOH588 4.6 36.9 1.0 CD B:ARG281 4.7 27.0 1.0 O B:HOH451 4.7 32.1 1.0 O B:HOH649 4.9 70.8 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca334 b:12.7 occ:1.00 O B:HIS64 2.3 15.1 1.0 O B:MET66 2.4 14.6 1.0 O B:HOH633 2.4 24.3 1.0 O B:HOH522 2.4 29.3 1.0 O B:HOH634 2.4 32.6 1.0 C B:HIS64 3.4 15.6 1.0 C B:MET66 3.5 14.9 1.0 N B:MET66 4.1 14.2 1.0 CA B:HIS64 4.2 15.9 1.0 C B:ARG65 4.2 14.5 1.0 O B:HOH343 4.4 21.3 1.0 CA B:ASN67 4.4 15.6 0.7 N B:ARG65 4.4 14.9 1.0 CA B:ASN67 4.4 15.4 0.3 N B:ASN67 4.4 15.4 1.0 CA B:ARG65 4.5 14.8 1.0 CA B:MET66 4.5 14.3 1.0 N B:LYS68 4.6 13.9 1.0 OD1 B:ASN67 4.7 17.9 0.3 O B:ARG65 4.7 14.4 1.0 O B:HOH402 4.7 20.0 1.0 CB B:HIS64 4.9 16.6 1.0

Z.Guo, Y.-W.Wu, D.Das, C.Delon, J.Cramer, S.Yu, S.Thuns, N.Lupilova, H.Waldmann, L.Brunsveld, R.S.Goody, K.Alexandrov, W.Blankenfeldt. Structures of Rabggtase-Substrate/Product Complexes Provide Insights Into the Evolution of Protein Prenylation Embo J. V. 27 2444 2008.
ISSN: ISSN 0261-4189
PubMed: 18756270
DOI: 10.1038/EMBOJ.2008.164