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Calcium in PDB 3dtn: Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei .

Protein crystallography data

The structure of Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei ., PDB code: 3dtn was solved by U.A.Ramagopal, R.Toro, A.J.Meyer, S.K.Burley, S.C.Almo, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.09
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.276, 49.940, 77.512, 90.00, 108.17, 90.00
R / Rfree (%) 18.7 / 23.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei . (pdb code 3dtn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei ., PDB code: 3dtn:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3dtn

Go back to Calcium Binding Sites List in 3dtn
Calcium binding site 1 out of 2 in the Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei .


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei . within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca233

b:29.8
occ:1.00
O A:HOH278 1.9 33.2 1.0
OE2 A:GLU76 2.1 23.4 1.0
O A:HOH277 2.4 32.5 1.0
OE1 A:GLU96 2.6 25.7 1.0
OE2 A:GLU96 2.6 28.9 1.0
CD A:GLU96 2.9 31.3 1.0
CD A:GLU76 3.2 25.3 1.0
CG A:GLU76 3.9 25.9 1.0
OE1 A:GLU76 4.3 28.5 1.0
CG A:GLU96 4.5 30.4 1.0

Calcium binding site 2 out of 2 in 3dtn

Go back to Calcium Binding Sites List in 3dtn
Calcium binding site 2 out of 2 in the Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei .


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei . within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca233

b:27.6
occ:1.00
O B:HOH306 2.0 32.5 1.0
OE2 B:GLU76 2.1 23.1 1.0
O B:HOH305 2.3 27.9 1.0
OE1 B:GLU96 2.6 30.4 1.0
OE2 B:GLU96 2.6 30.7 1.0
CD B:GLU96 2.9 32.8 1.0
CD B:GLU76 3.2 29.1 1.0
CG B:GLU76 3.9 27.9 1.0
OE1 B:GLU76 4.2 28.6 1.0
CG B:GLU96 4.5 29.8 1.0
O B:HOH270 4.7 38.5 1.0

Reference:

U.A.Ramagopal, R.Toro, A.J.Meyer, S.K.Burley, S.C.Almo. Crystal Structure of Putative Methyltransferase-MM_2633 From Methanosarcina Mazei To Be Published.
Page generated: Sat Dec 12 04:09:19 2020

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