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Calcium in PDB 3dvq: Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline

Enzymatic activity of Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline

All present enzymatic activity of Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline:
3.4.21.64;

Protein crystallography data

The structure of Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline, PDB code: 3dvq was solved by E.Pechkova, S.K.Tripathi, C.Nicolini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.06 / 1.02
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.937, 67.937, 102.149, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 22.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline (pdb code 3dvq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline, PDB code: 3dvq:

Calcium binding site 1 out of 1 in 3dvq

Go back to Calcium Binding Sites List in 3dvq
Calcium binding site 1 out of 1 in the Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Proteinase K By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca280

b:7.7
occ:1.00
O X:HOH300 2.6 6.8 1.0
OG1 X:THR179 2.7 4.1 1.0
O X:VAL177 2.8 5.8 1.0
O X:HOH410 2.8 14.4 1.0
O X:GLU174 2.8 4.8 1.0
OD2 X:ASP200 2.8 5.4 1.0
O X:VAL198 3.1 6.6 1.0
CB X:THR179 3.5 3.7 1.0
O X:PRO175 3.6 6.3 1.0
CG2 X:VAL198 3.6 9.1 1.0
C X:VAL177 3.8 4.0 1.0
N X:THR179 3.8 3.5 1.0
CG X:ASP200 3.8 5.7 1.0
C X:GLU174 3.8 4.8 1.0
C X:PRO175 3.9 5.3 1.0
CA X:PRO175 3.9 5.8 1.0
O X:ALA172 4.0 4.5 1.0
OD1 X:ASP200 4.2 7.7 1.0
C X:VAL198 4.2 6.2 1.0
CA X:THR179 4.3 3.6 1.0
N X:PRO175 4.4 5.4 1.0
N X:VAL177 4.4 4.1 1.0
CG2 X:VAL177 4.4 5.0 1.0
C X:CYS178 4.6 3.6 1.0
N X:CYS178 4.7 3.6 1.0
CA X:VAL177 4.7 3.9 1.0
O X:HOH390 4.7 12.3 1.0
CA X:CYS178 4.7 3.6 1.0
CG2 X:THR179 4.8 4.1 1.0
CB X:VAL198 4.8 7.3 1.0
N X:SER176 4.8 4.7 1.0
CA X:VAL198 4.8 6.8 1.0
O X:HOH415 4.9 27.3 1.0
O X:HOH337 4.9 22.5 1.0
N X:GLU174 5.0 4.8 1.0

Reference:

E.Pechkova, S.K.Tripathi, C.Nicolini. Radiation Damage in Protein Structural Characterization By Synchrotron Radiation: State of the Art and Nanotechnology-Based Perspective To Be Published.
Page generated: Sat Dec 12 04:09:24 2020

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