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Calcium in PDB 3dvr: Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline

Enzymatic activity of Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline

All present enzymatic activity of Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline:
3.4.21.64;

Protein crystallography data

The structure of Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline, PDB code: 3dvr was solved by E.Pechkova, S.K.Tripathi, C.Nicolini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.61 / 1.02
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.963, 67.963, 102.196, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 21.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline (pdb code 3dvr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline, PDB code: 3dvr:

Calcium binding site 1 out of 1 in 3dvr

Go back to Calcium Binding Sites List in 3dvr
Calcium binding site 1 out of 1 in the Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Proteinase K By Lb Nanotemplate Method After the First Step of High X-Ray Dose on Esrf ID14-2 Beamline within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca280

b:9.5
occ:1.00
 O X:HOH300 2.1 85.4 1.0
OG1 X:THR179 2.7 5.2 1.0
O X:VAL177 2.8 7.1 1.0
O X:GLU174 2.8 6.0 1.0
OD2 X:ASP200 2.8 6.9 1.0
O X:HOH337 2.8 17.3 1.0
O X:VAL198 3.1 7.8 1.0
CB X:THR179 3.5 4.3 1.0
O X:PRO175 3.6 7.9 1.0
C X:VAL177 3.8 5.2 1.0
N X:THR179 3.8 4.2 1.0
C X:GLU174 3.9 5.9 1.0
CG X:ASP200 3.9 7.0 1.0
C X:PRO175 3.9 6.9 1.0
CA X:PRO175 4.0 7.0 1.0
O X:ALA172 4.0 5.5 1.0
OD1 X:ASP200 4.2 9.1 1.0
C X:VAL198 4.3 6.9 1.0
CA X:THR179 4.3 4.2 1.0
CG2 X:VAL177 4.4 6.5 1.0
N X:PRO175 4.4 6.5 1.0
N X:VAL177 4.4 5.3 1.0
C X:CYS178 4.6 4.9 1.0
N X:CYS178 4.6 5.1 1.0
CA X:VAL177 4.7 5.2 1.0
CA X:CYS178 4.7 5.0 1.0
O X:HOH390 4.7 17.4 1.0
CB X:VAL198 4.8 7.7 1.0
CG2 X:THR179 4.8 5.3 1.0
N X:SER176 4.8 6.1 1.0
CA X:VAL198 4.8 7.2 1.0
O X:HOH410 4.8 33.4 1.0

Reference:

E.Pechkova, S.K.Tripathi, C.Nicolini. Radiation Damage in Protein Structural Characterization By Synchrotron Radiation: State of the Art and Nanotechnology-Based Perspective To Be Published.
Page generated: Sat Jul 13 09:12:18 2024

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