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Calcium in PDB 3dvs: Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline

Enzymatic activity of Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline

All present enzymatic activity of Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline:
3.4.21.64;

Protein crystallography data

The structure of Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline, PDB code: 3dvs was solved by E.Pechkova, S.K.Tripathi, C.Nicolini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.61 / 1.02
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.986, 67.986, 102.248, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 22.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline (pdb code 3dvs). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline, PDB code: 3dvs:

Calcium binding site 1 out of 1 in 3dvs

Go back to Calcium Binding Sites List in 3dvs
Calcium binding site 1 out of 1 in the Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Proteinase K By Lb Nanotmplate Method After the Second Step of High Dose on Esrf ID14-2 Beamline within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca280

b:25.5
occ:1.00
 O X:HOH337 2.3 33.2 1.0
O X:HOH410 2.3 19.1 1.0
O X:HOH390 2.3 22.7 1.0
O X:VAL177 2.4 7.4 1.0
O X:PRO175 2.5 8.7 1.0
OD2 X:ASP200 2.6 7.8 1.0
O X:HOH300 2.6 3.1 1.0
OD1 X:ASP200 2.7 10.1 1.0
CG X:ASP200 2.9 7.8 1.0
C X:PRO175 3.5 7.2 1.0
C X:VAL177 3.6 5.7 1.0
N X:VAL177 4.1 6.1 1.0
CA X:PRO175 4.2 7.8 1.0
C X:SER176 4.3 6.5 1.0
CB X:ASP200 4.4 7.0 1.0
O X:GLU174 4.4 6.8 1.0
N X:SER176 4.4 6.2 1.0
N X:CYS178 4.5 5.4 1.0
CA X:CYS178 4.5 5.2 1.0
CA X:VAL177 4.5 5.5 1.0
O X:HOH399 4.5 86.6 1.0
O X:VAL198 4.6 8.2 1.0
CA X:SER176 4.6 7.1 1.0
N X:THR179 4.7 4.7 1.0
SG X:CYS249 4.8 10.4 1.0
O X:HOH415 4.9 35.1 1.0
O X:SER176 4.9 8.2 1.0

Reference:

E.Pechkova, S.K.Tripathi, S.Mcsweeney, C.Nicolini. Radiation Damage in Protein Structural Characterization By Synchrotron Radiation: State of the Art and Nanotechnology-Based Perspective To Be Published.
Page generated: Sat Dec 12 04:09:26 2020

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