Calcium in PDB 3dzm: Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27

The structure of Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27, PDB code: 3dzm was solved by A.Brosig, K.Diederichs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.13 / 2.80
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	166.980, 166.980, 98.120, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 23.4

The binding sites of Calcium atom in the Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27 (pdb code 3dzm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27, PDB code: 3dzm:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca208 b:0.2 occ:1.00 O A:LEU47 2.7 0.2 1.0 OE2 A:GLU70 2.7 0.2 1.0 OD1 A:ASP49 2.9 0.5 1.0 OD1 A:ASP45 2.9 0.2 1.0 OE1 A:GLU70 3.1 0.4 1.0 CD A:GLU70 3.2 0.5 1.0 CG A:ASP45 3.3 0.5 1.0 CG A:ASP49 3.3 0.6 1.0 OD2 A:ASP45 3.4 0.8 1.0 OD2 A:ASP49 3.5 0.8 1.0 C A:LEU47 3.9 0.8 1.0 NZ A:LYS63 4.0 85.1 1.0 N A:ASP49 4.1 0.6 1.0 CB A:ASP49 4.3 0.8 1.0 CB A:ASP45 4.4 0.3 1.0 N A:LEU47 4.5 93.4 1.0 CG A:GLU70 4.6 99.6 1.0 CA A:ASP49 4.6 0.3 1.0 NE1 A:TRP59 4.8 92.2 1.0 C A:ASP48 4.8 0.5 1.0 CA A:LEU47 4.8 96.2 1.0 N A:ASP48 4.8 0.4 1.0 CA A:ASP48 4.9 0.9 1.0 CD1 A:TRP59 4.9 93.4 1.0 N A:ALA46 4.9 78.4 1.0 CE A:LYS63 5.0 94.0 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca208 b:0.7 occ:1.00 OD1 B:ASP49 2.7 0.3 1.0 O B:LEU47 2.7 96.3 1.0 OE2 B:GLU70 2.7 0.7 1.0 OE1 B:GLU70 2.9 0.1 1.0 OD1 B:ASP45 3.0 0.7 1.0 CG B:ASP49 3.1 0.3 1.0 CD B:GLU70 3.2 0.1 1.0 CG B:ASP45 3.5 0.7 1.0 OD2 B:ASP45 3.5 0.4 1.0 OD2 B:ASP49 3.7 95.7 1.0 CB B:ASP49 3.8 0.0 1.0 NZ B:LYS63 3.8 94.1 1.0 C B:LEU47 3.9 96.4 1.0 N B:ASP49 3.9 0.6 1.0 N B:LEU47 4.4 97.9 1.0 CA B:ASP49 4.5 0.7 1.0 CG B:GLU70 4.6 98.1 1.0 NE1 B:TRP59 4.7 90.5 1.0 N B:ALA46 4.7 95.1 1.0 CA B:LEU47 4.7 95.9 1.0 CB B:ASP45 4.7 0.9 1.0 CD1 B:TRP59 4.8 91.5 1.0 CE B:LYS63 4.8 98.8 1.0 N B:ASP48 4.8 96.8 1.0 C B:ASP48 4.9 0.1 1.0 CA B:ASP48 4.9 96.0 1.0 CA B:ASP45 4.9 0.1 1.0 O B:ASP49 5.0 1.0 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca208 b:0.9 occ:1.00 OD1 C:ASP45 2.7 0.0 1.0 OD1 C:ASP49 2.7 0.0 1.0 OE1 C:GLU70 2.8 0.2 1.0 O C:LEU47 2.8 0.2 1.0 OE2 C:GLU70 3.1 0.7 1.0 CG C:ASP49 3.2 0.4 1.0 CD C:GLU70 3.3 0.5 1.0 OD2 C:ASP49 3.4 0.1 1.0 CG C:ASP45 3.7 0.4 1.0 N C:ASP49 3.9 0.7 1.0 C C:LEU47 4.0 0.2 1.0 OD2 C:ASP45 4.1 0.4 1.0 CB C:ASP49 4.2 0.2 1.0 NZ C:LYS63 4.2 0.9 1.0 N C:LEU47 4.6 95.1 1.0 CA C:ASP49 4.6 0.5 1.0 CG C:GLU70 4.7 0.1 1.0 NE1 C:TRP59 4.7 0.6 1.0 C C:ASP48 4.8 0.3 1.0 N C:ALA46 4.8 0.5 1.0 CB C:ASP45 4.9 1.0 1.0 N C:ASP48 4.9 0.1 1.0 CA C:LEU47 4.9 95.2 1.0 CA C:ASP48 4.9 0.4 1.0 CD1 C:TRP59 4.9 0.8 1.0

A.Brosig, J.Nesper, W.Boos, W.Welte, K.Diederichs. Crystal Structure of A Major Outer Membrane Protein From Thermus Thermophilus HB27 J.Mol.Biol. V. 385 1445 2009.
ISSN: ISSN 0022-2836
PubMed: 19101566
DOI: 10.1016/J.JMB.2008.12.003