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Calcium in PDB 3dzz: Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution, PDB code: 3dzz was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.78 / 1.61
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.800, 94.800, 84.602, 90.00, 127.13, 90.00
R / Rfree (%) 14.4 / 17.5

Other elements in 3dzz:

The structure of Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution (pdb code 3dzz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution, PDB code: 3dzz:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3dzz

Go back to Calcium Binding Sites List in 3dzz
Calcium binding site 1 out of 2 in the Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca391

b:25.3
occ:1.00
O A:HOH594 1.9 37.9 1.0
OD2 A:ASP208 2.1 27.9 1.0
O A:HOH595 2.3 38.1 1.0
O A:HOH617 2.4 41.4 1.0
CG A:ASP208 3.3 24.7 1.0
O A:HOH459 4.0 24.8 1.0
OD1 A:ASP208 4.1 33.6 1.0
CB A:ASP208 4.3 18.6 1.0
O A:HOH582 4.3 37.0 1.0

Calcium binding site 2 out of 2 in 3dzz

Go back to Calcium Binding Sites List in 3dzz
Calcium binding site 2 out of 2 in the Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Plp-Dependent Aminotransferase (LBUL_1103) From Lactobacillus Delbrueckii Subsp. at 1.61 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca392

b:29.6
occ:0.50
OE1 A:GLU308 2.5 25.8 1.0
O A:HOH555 2.6 34.3 1.0
O A:HOH561 2.7 34.7 1.0
OE2 A:GLU308 2.8 29.2 1.0
CD A:GLU308 3.0 34.4 1.0
NZ A:LYS382 4.2 34.4 1.0
CG A:GLU308 4.5 23.4 1.0
O A:LYS307 4.5 18.6 1.0
CA A:GLU308 4.9 19.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 04:09:32 2020

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