Calcium in PDB 3ead: Crystal Structure of Calx-CBD1
Protein crystallography data
The structure of Crystal Structure of Calx-CBD1, PDB code: 3ead
was solved by
L.Zheng,
M.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.59 /
2.25
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.372,
73.722,
129.713,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
21 /
26.9
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Calx-CBD1
(pdb code 3ead). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Crystal Structure of Calx-CBD1, PDB code: 3ead:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 1 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:69.4
occ:1.00
|
OD2
|
A:ASP490
|
2.5
|
47.2
|
1.0
|
|
OD1
|
A:ASP490
|
2.6
|
46.3
|
1.0
|
|
OE2
|
A:GLU520
|
2.6
|
42.6
|
1.0
|
|
OE1
|
A:GLU523
|
2.9
|
52.4
|
1.0
|
|
CG
|
A:ASP490
|
2.9
|
45.5
|
1.0
|
|
OE2
|
A:GLU523
|
2.9
|
47.0
|
1.0
|
|
CD
|
A:GLU523
|
3.3
|
50.6
|
1.0
|
|
CD
|
A:GLU520
|
3.6
|
43.4
|
1.0
|
|
CA
|
A:CA1002
|
4.0
|
70.6
|
1.0
|
|
CG
|
A:GLU520
|
4.2
|
43.4
|
1.0
|
|
CB
|
A:ASP490
|
4.4
|
44.7
|
1.0
|
|
OE1
|
A:GLU520
|
4.5
|
42.7
|
1.0
|
|
O
|
A:THR484
|
4.6
|
50.3
|
1.0
|
|
CG
|
A:GLU523
|
4.7
|
49.6
|
1.0
|
|
CB
|
A:GLU520
|
4.9
|
43.8
|
1.0
|
|
Calcium binding site 2 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 2 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:70.6
occ:1.00
|
OE1
|
A:GLU455
|
2.3
|
48.9
|
1.0
|
|
OD2
|
A:ASP490
|
2.3
|
47.2
|
1.0
|
|
OE2
|
A:GLU520
|
2.5
|
42.6
|
1.0
|
|
CD
|
A:GLU455
|
3.1
|
45.5
|
1.0
|
|
CD
|
A:GLU520
|
3.2
|
43.4
|
1.0
|
|
OE1
|
A:GLU520
|
3.2
|
42.7
|
1.0
|
|
OE2
|
A:GLU455
|
3.3
|
47.4
|
1.0
|
|
CG
|
A:ASP490
|
3.4
|
45.5
|
1.0
|
|
CB
|
A:ASP490
|
3.9
|
44.7
|
1.0
|
|
OE1
|
A:GLU523
|
4.0
|
52.4
|
1.0
|
|
CA
|
A:CA1001
|
4.0
|
69.4
|
1.0
|
|
CA
|
A:ASP490
|
4.2
|
44.5
|
1.0
|
|
CA
|
A:CA1003
|
4.3
|
68.7
|
1.0
|
|
OD1
|
A:ASP490
|
4.4
|
46.3
|
1.0
|
|
CG
|
A:GLU455
|
4.5
|
44.1
|
1.0
|
|
O
|
A:ILE514
|
4.5
|
42.7
|
1.0
|
|
CG2
|
A:ILE548
|
4.6
|
41.0
|
1.0
|
|
O
|
A:THR489
|
4.6
|
45.8
|
1.0
|
|
CG
|
A:GLU520
|
4.6
|
43.4
|
1.0
|
|
OD1
|
A:ASP550
|
4.7
|
45.5
|
1.0
|
|
OD1
|
A:ASP516
|
4.8
|
43.1
|
1.0
|
|
CD
|
A:GLU523
|
5.0
|
50.6
|
1.0
|
|
OD2
|
A:ASP516
|
5.0
|
44.8
|
1.0
|
|
O
|
A:ASP490
|
5.0
|
43.2
|
1.0
|
|
Calcium binding site 3 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 3 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1003
b:68.7
occ:1.00
|
OD2
|
A:ASP552
|
2.2
|
44.0
|
1.0
|
|
OE2
|
A:GLU455
|
2.2
|
47.4
|
1.0
|
|
OD2
|
A:ASP516
|
2.3
|
44.8
|
1.0
|
|
OE1
|
A:GLU520
|
2.5
|
42.7
|
1.0
|
|
O
|
A:VAL518
|
2.6
|
43.0
|
1.0
|
|
OD1
|
A:ASP550
|
2.7
|
45.5
|
1.0
|
|
CD
|
A:GLU455
|
2.9
|
45.5
|
1.0
|
|
CG
|
A:ASP552
|
3.3
|
41.9
|
1.0
|
|
OE1
|
A:GLU455
|
3.3
|
48.9
|
1.0
|
|
CG
|
A:ASP516
|
3.4
|
43.0
|
1.0
|
|
CD
|
A:GLU520
|
3.6
|
43.4
|
1.0
|
|
C
|
A:VAL518
|
3.7
|
43.0
|
1.0
|
|
CG
|
A:ASP550
|
3.8
|
46.0
|
1.0
|
|
CA
|
A:CA1004
|
3.8
|
75.4
|
1.0
|
|
O
|
A:ASP516
|
3.9
|
42.5
|
1.0
|
|
OD1
|
A:ASP552
|
3.9
|
40.7
|
1.0
|
|
OD1
|
A:ASP516
|
3.9
|
43.1
|
1.0
|
|
CG
|
A:GLU455
|
4.0
|
44.1
|
1.0
|
|
OD2
|
A:ASP550
|
4.1
|
46.2
|
1.0
|
|
N
|
A:VAL518
|
4.2
|
42.6
|
1.0
|
|
CA
|
A:CA1002
|
4.3
|
70.6
|
1.0
|
|
C
|
A:ASP516
|
4.4
|
42.5
|
1.0
|
|
CG
|
A:GLU520
|
4.4
|
43.4
|
1.0
|
|
OE2
|
A:GLU520
|
4.4
|
42.6
|
1.0
|
|
CA
|
A:VAL518
|
4.5
|
42.7
|
1.0
|
|
OD1
|
A:ASP551
|
4.5
|
44.5
|
1.0
|
|
N
|
A:ASP516
|
4.6
|
42.4
|
1.0
|
|
CB
|
A:ASP552
|
4.6
|
43.3
|
1.0
|
|
CB
|
A:ASP516
|
4.6
|
42.5
|
1.0
|
|
CB
|
A:VAL518
|
4.7
|
42.9
|
1.0
|
|
N
|
A:PHE519
|
4.7
|
43.4
|
1.0
|
|
CA
|
A:ASP516
|
4.7
|
42.4
|
1.0
|
|
N
|
A:GLU520
|
4.8
|
43.8
|
1.0
|
|
CA
|
A:PHE519
|
4.9
|
43.5
|
1.0
|
|
CB
|
A:GLU455
|
4.9
|
43.6
|
1.0
|
|
CB
|
A:GLU520
|
5.0
|
43.8
|
1.0
|
|
Calcium binding site 4 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 4 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1004
b:75.4
occ:1.00
|
OD1
|
A:ASP552
|
2.0
|
40.7
|
1.0
|
|
O
|
A:ASP516
|
2.4
|
42.5
|
1.0
|
|
OD2
|
A:ASP515
|
2.7
|
39.0
|
1.0
|
|
OD1
|
A:ASP551
|
2.8
|
44.5
|
1.0
|
|
OD2
|
A:ASP551
|
2.9
|
48.7
|
1.0
|
|
CG
|
A:ASP552
|
2.9
|
41.9
|
1.0
|
|
CG
|
A:ASP551
|
3.2
|
45.5
|
1.0
|
|
OD2
|
A:ASP552
|
3.3
|
44.0
|
1.0
|
|
CG
|
A:GLU455
|
3.4
|
44.1
|
1.0
|
|
C
|
A:ASP516
|
3.6
|
42.5
|
1.0
|
|
N
|
A:ASP516
|
3.6
|
42.4
|
1.0
|
|
OE2
|
A:GLU455
|
3.7
|
47.4
|
1.0
|
|
CG
|
A:ASP515
|
3.7
|
42.2
|
1.0
|
|
CA
|
A:CA1003
|
3.8
|
68.7
|
1.0
|
|
CD
|
A:GLU455
|
3.9
|
45.5
|
1.0
|
|
OD2
|
A:ASP516
|
4.1
|
44.8
|
1.0
|
|
OD1
|
A:ASP515
|
4.1
|
44.0
|
1.0
|
|
CA
|
A:ASP516
|
4.2
|
42.4
|
1.0
|
|
CB
|
A:GLU455
|
4.3
|
43.6
|
1.0
|
|
OD1
|
A:ASP517
|
4.4
|
40.4
|
1.0
|
|
CB
|
A:ASP552
|
4.4
|
43.3
|
1.0
|
|
N
|
A:ASP552
|
4.5
|
44.1
|
1.0
|
|
C
|
A:ASP515
|
4.7
|
42.1
|
1.0
|
|
N
|
A:ASP517
|
4.7
|
42.7
|
1.0
|
|
CB
|
A:ASP551
|
4.7
|
45.3
|
1.0
|
|
CA
|
A:ASP515
|
4.8
|
42.4
|
1.0
|
|
CB
|
A:ASP515
|
4.8
|
42.6
|
1.0
|
|
OD1
|
A:ASP550
|
4.9
|
45.5
|
1.0
|
|
CA
|
A:ASP552
|
4.9
|
43.4
|
1.0
|
|
CA
|
A:ASP517
|
4.9
|
42.8
|
1.0
|
|
Calcium binding site 5 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 5 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1001
b:53.5
occ:1.00
|
OE2
|
B:GLU520
|
2.5
|
48.5
|
1.0
|
|
OD1
|
B:ASP490
|
2.5
|
39.5
|
1.0
|
|
O
|
B:HOH165
|
2.5
|
46.5
|
1.0
|
|
OE2
|
B:GLU523
|
2.6
|
46.4
|
1.0
|
|
OD2
|
B:ASP490
|
2.7
|
46.7
|
1.0
|
|
OE1
|
B:GLU523
|
2.7
|
47.7
|
1.0
|
|
CG
|
B:ASP490
|
2.9
|
44.5
|
1.0
|
|
CD
|
B:GLU523
|
3.0
|
48.0
|
1.0
|
|
CD
|
B:GLU520
|
3.5
|
48.1
|
1.0
|
|
CA
|
B:CA1002
|
4.2
|
46.9
|
1.0
|
|
CG
|
B:GLU520
|
4.3
|
48.1
|
1.0
|
|
OE1
|
B:GLU520
|
4.3
|
47.8
|
1.0
|
|
CB
|
B:ASP490
|
4.4
|
43.7
|
1.0
|
|
O
|
B:HOH159
|
4.5
|
44.3
|
1.0
|
|
CG
|
B:GLU523
|
4.6
|
47.5
|
1.0
|
|
O
|
B:THR484
|
4.7
|
45.2
|
1.0
|
|
OG1
|
B:THR489
|
5.0
|
44.9
|
1.0
|
|
CA
|
B:ALA485
|
5.0
|
44.2
|
1.0
|
|
Calcium binding site 6 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 6 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1002
b:46.9
occ:1.00
|
OE1
|
B:GLU455
|
2.4
|
46.1
|
1.0
|
|
O
|
B:HOH159
|
2.5
|
44.3
|
1.0
|
|
O
|
B:HOH158
|
2.5
|
33.5
|
1.0
|
|
OD2
|
B:ASP490
|
2.5
|
46.7
|
1.0
|
|
OE2
|
B:GLU520
|
2.6
|
48.5
|
1.0
|
|
OE1
|
B:GLU520
|
2.7
|
47.8
|
1.0
|
|
CD
|
B:GLU520
|
3.0
|
48.1
|
1.0
|
|
CG
|
B:ASP490
|
3.5
|
44.5
|
1.0
|
|
CD
|
B:GLU455
|
3.5
|
48.1
|
1.0
|
|
CB
|
B:ASP490
|
4.0
|
43.7
|
1.0
|
|
CG
|
B:GLU455
|
4.0
|
48.6
|
1.0
|
|
CA
|
B:CA1003
|
4.0
|
49.6
|
1.0
|
|
CA
|
B:CA1001
|
4.2
|
53.5
|
1.0
|
|
CA
|
B:ASP490
|
4.2
|
43.6
|
1.0
|
|
OE1
|
B:GLU523
|
4.3
|
47.7
|
1.0
|
|
O
|
B:ILE514
|
4.3
|
45.4
|
1.0
|
|
CG
|
B:GLU520
|
4.4
|
48.1
|
1.0
|
|
O
|
B:THR489
|
4.5
|
42.3
|
1.0
|
|
OD1
|
B:ASP490
|
4.5
|
39.5
|
1.0
|
|
OE2
|
B:GLU455
|
4.6
|
47.7
|
1.0
|
|
OD1
|
B:ASP550
|
4.6
|
43.8
|
1.0
|
|
CB
|
B:GLU520
|
4.7
|
47.8
|
1.0
|
|
OD2
|
B:ASP516
|
4.8
|
47.0
|
1.0
|
|
CG2
|
B:ILE548
|
4.9
|
43.8
|
1.0
|
|
O
|
B:ASP490
|
4.9
|
44.8
|
1.0
|
|
OD1
|
B:ASP516
|
4.9
|
46.9
|
1.0
|
|
CD
|
B:GLU523
|
4.9
|
48.0
|
1.0
|
|
CB
|
B:GLU455
|
5.0
|
49.6
|
1.0
|
|
Calcium binding site 7 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 7 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1003
b:49.6
occ:1.00
|
OD1
|
B:ASP550
|
2.3
|
43.8
|
1.0
|
|
OD2
|
B:ASP552
|
2.3
|
44.7
|
1.0
|
|
OE1
|
B:GLU520
|
2.5
|
47.8
|
1.0
|
|
O
|
B:VAL518
|
2.5
|
46.5
|
1.0
|
|
OE1
|
B:GLU455
|
2.5
|
46.1
|
1.0
|
|
OD2
|
B:ASP516
|
2.6
|
47.0
|
1.0
|
|
OE2
|
B:GLU455
|
2.6
|
47.7
|
1.0
|
|
CD
|
B:GLU455
|
2.9
|
48.1
|
1.0
|
|
CG
|
B:ASP550
|
3.5
|
46.1
|
1.0
|
|
CD
|
B:GLU520
|
3.5
|
48.1
|
1.0
|
|
CG
|
B:ASP552
|
3.5
|
49.0
|
1.0
|
|
C
|
B:VAL518
|
3.7
|
47.2
|
1.0
|
|
CG
|
B:ASP516
|
3.8
|
46.3
|
1.0
|
|
CG
|
B:GLU520
|
4.0
|
48.1
|
1.0
|
|
CA
|
B:CA1004
|
4.0
|
58.9
|
1.0
|
|
CA
|
B:CA1002
|
4.0
|
46.9
|
1.0
|
|
OD2
|
B:ASP550
|
4.0
|
46.3
|
1.0
|
|
N
|
B:VAL518
|
4.1
|
47.3
|
1.0
|
|
O
|
B:ASP516
|
4.2
|
46.6
|
1.0
|
|
C
|
B:ASP516
|
4.4
|
46.6
|
1.0
|
|
OD1
|
B:ASP552
|
4.4
|
47.0
|
1.0
|
|
CB
|
B:ASP552
|
4.4
|
50.9
|
1.0
|
|
CG
|
B:GLU455
|
4.4
|
48.6
|
1.0
|
|
CB
|
B:GLU520
|
4.4
|
47.8
|
1.0
|
|
CA
|
B:VAL518
|
4.4
|
47.0
|
1.0
|
|
OD1
|
B:ASP516
|
4.4
|
46.9
|
1.0
|
|
OE2
|
B:GLU520
|
4.5
|
48.5
|
1.0
|
|
N
|
B:ASP516
|
4.6
|
45.6
|
1.0
|
|
N
|
B:GLU520
|
4.6
|
48.0
|
1.0
|
|
CB
|
B:ASP550
|
4.7
|
45.6
|
1.0
|
|
N
|
B:ASP517
|
4.7
|
46.9
|
1.0
|
|
OD1
|
B:ASP551
|
4.7
|
49.7
|
1.0
|
|
N
|
B:PHE519
|
4.7
|
47.2
|
1.0
|
|
C
|
B:ASP517
|
4.8
|
47.6
|
1.0
|
|
CB
|
B:VAL518
|
4.8
|
47.0
|
1.0
|
|
CA
|
B:ASP516
|
4.9
|
45.8
|
1.0
|
|
CB
|
B:ASP516
|
4.9
|
45.4
|
1.0
|
|
C
|
B:PHE519
|
4.9
|
48.1
|
1.0
|
|
CA
|
B:PHE519
|
5.0
|
47.9
|
1.0
|
|
Calcium binding site 8 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 8 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1004
b:58.9
occ:1.00
|
OD2
|
B:ASP515
|
2.2
|
42.5
|
1.0
|
|
O
|
B:ASP516
|
2.2
|
46.6
|
1.0
|
|
OD1
|
B:ASP551
|
2.4
|
49.7
|
1.0
|
|
OD1
|
B:ASP552
|
2.5
|
47.0
|
1.0
|
|
OE2
|
B:GLU455
|
2.5
|
47.7
|
1.0
|
|
OD2
|
B:ASP552
|
2.8
|
44.7
|
1.0
|
|
CG
|
B:ASP552
|
3.0
|
49.0
|
1.0
|
|
CG
|
B:ASP515
|
3.3
|
44.5
|
1.0
|
|
CG
|
B:ASP551
|
3.3
|
49.1
|
1.0
|
|
C
|
B:ASP516
|
3.4
|
46.6
|
1.0
|
|
OD2
|
B:ASP551
|
3.6
|
47.2
|
1.0
|
|
CD
|
B:GLU455
|
3.7
|
48.1
|
1.0
|
|
OD1
|
B:ASP515
|
3.8
|
44.3
|
1.0
|
|
N
|
B:ASP516
|
3.8
|
45.6
|
1.0
|
|
CA
|
B:CA1003
|
4.0
|
49.6
|
1.0
|
|
CA
|
B:ASP516
|
4.2
|
45.8
|
1.0
|
|
N
|
B:ASP517
|
4.4
|
46.9
|
1.0
|
|
CG
|
B:GLU455
|
4.5
|
48.6
|
1.0
|
|
CB
|
B:ASP552
|
4.6
|
50.9
|
1.0
|
|
OE1
|
B:GLU455
|
4.6
|
46.1
|
1.0
|
|
CB
|
B:ASP515
|
4.6
|
44.5
|
1.0
|
|
C
|
B:ASP515
|
4.6
|
45.4
|
1.0
|
|
OD2
|
B:ASP516
|
4.6
|
47.0
|
1.0
|
|
CA
|
B:ASP517
|
4.6
|
47.4
|
1.0
|
|
CA
|
B:ASP515
|
4.7
|
45.2
|
1.0
|
|
CB
|
B:ASP551
|
4.7
|
48.9
|
1.0
|
|
C
|
B:ASP551
|
4.7
|
49.8
|
1.0
|
|
CB
|
B:GLU455
|
4.9
|
49.6
|
1.0
|
|
O
|
B:ASP551
|
4.9
|
50.1
|
1.0
|
|
N
|
B:ASP551
|
4.9
|
47.5
|
1.0
|
|
N
|
B:ASP552
|
4.9
|
50.8
|
1.0
|
|
OD1
|
B:ASP550
|
5.0
|
43.8
|
1.0
|
|
Calcium binding site 9 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 9 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1001
b:52.7
occ:1.00
|
OE1
|
C:GLU523
|
2.2
|
49.2
|
1.0
|
|
OD2
|
C:ASP490
|
2.4
|
51.1
|
1.0
|
|
OE2
|
C:GLU520
|
2.4
|
52.6
|
1.0
|
|
OD1
|
C:ASP490
|
2.7
|
45.6
|
1.0
|
|
CG
|
C:ASP490
|
2.9
|
49.0
|
1.0
|
|
CD
|
C:GLU523
|
3.3
|
50.0
|
1.0
|
|
CD
|
C:GLU520
|
3.4
|
49.4
|
1.0
|
|
OE2
|
C:GLU523
|
3.8
|
51.8
|
1.0
|
|
OG1
|
C:THR489
|
4.1
|
53.9
|
1.0
|
|
OE1
|
C:GLU520
|
4.1
|
50.1
|
1.0
|
|
CA
|
C:CA1002
|
4.1
|
47.1
|
1.0
|
|
CG
|
C:GLU520
|
4.2
|
48.5
|
1.0
|
|
O
|
C:HOH173
|
4.2
|
30.4
|
1.0
|
|
CB
|
C:ASP490
|
4.4
|
48.6
|
1.0
|
|
CG
|
C:GLU523
|
4.5
|
49.4
|
1.0
|
|
O
|
C:THR484
|
4.6
|
46.8
|
1.0
|
|
Calcium binding site 10 out
of 16 in 3ead
Go back to
Calcium Binding Sites List in 3ead
Calcium binding site 10 out
of 16 in the Crystal Structure of Calx-CBD1
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Calx-CBD1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1002
b:47.1
occ:1.00
|
OE1
|
C:GLU520
|
2.4
|
50.1
|
1.0
|
|
OE2
|
C:GLU520
|
2.5
|
52.6
|
1.0
|
|
O
|
C:HOH171
|
2.5
|
38.0
|
1.0
|
|
O
|
C:HOH173
|
2.6
|
30.4
|
1.0
|
|
OD2
|
C:ASP490
|
2.7
|
51.1
|
1.0
|
|
OE1
|
C:GLU455
|
2.7
|
42.2
|
1.0
|
|
CD
|
C:GLU520
|
2.8
|
49.4
|
1.0
|
|
CD
|
C:GLU455
|
3.5
|
44.2
|
1.0
|
|
CA
|
C:CA1003
|
3.8
|
50.4
|
1.0
|
|
CG
|
C:ASP490
|
3.9
|
49.0
|
1.0
|
|
OE2
|
C:GLU455
|
4.0
|
50.2
|
1.0
|
|
OD1
|
C:ASP516
|
4.1
|
44.4
|
1.0
|
|
CA
|
C:CA1001
|
4.1
|
52.7
|
1.0
|
|
CG
|
C:GLU520
|
4.2
|
48.5
|
1.0
|
|
CB
|
C:ASP490
|
4.4
|
48.6
|
1.0
|
|
CG
|
C:GLU455
|
4.4
|
44.1
|
1.0
|
|
CA
|
C:ASP490
|
4.4
|
49.1
|
1.0
|
|
O
|
C:ILE514
|
4.5
|
41.9
|
1.0
|
|
CB
|
C:GLU455
|
4.5
|
43.3
|
1.0
|
|
O
|
C:HOH174
|
4.5
|
41.0
|
1.0
|
|
OD1
|
C:ASP550
|
4.5
|
41.0
|
1.0
|
|
OE1
|
C:GLU523
|
4.7
|
49.2
|
1.0
|
|
CG2
|
C:ILE548
|
4.7
|
41.7
|
1.0
|
|
CB
|
C:GLU520
|
4.7
|
49.2
|
1.0
|
|
O
|
C:THR489
|
4.8
|
50.8
|
1.0
|
|
CG
|
C:ASP516
|
4.9
|
42.6
|
1.0
|
|
OD1
|
C:ASP490
|
4.9
|
45.6
|
1.0
|
|
Reference:
M.Wu,
M.Wang,
L.Zheng.
Crystal Structure of Calcium Binding Domain 1 From Calx To Be Published.
Page generated: Sat Dec 12 04:09:50 2020
|
