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Calcium in PDB 3ehh: Crystal Structure of Deskc-H188V in Complex with Adp

Enzymatic activity of Crystal Structure of Deskc-H188V in Complex with Adp

All present enzymatic activity of Crystal Structure of Deskc-H188V in Complex with Adp:
2.7.13.3;

Protein crystallography data

The structure of Crystal Structure of Deskc-H188V in Complex with Adp, PDB code: 3ehh was solved by D.Albanesi, P.M.Alzari, A.Buschiazzo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.743, 124.050, 138.303, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 23.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Deskc-H188V in Complex with Adp (pdb code 3ehh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Deskc-H188V in Complex with Adp, PDB code: 3ehh:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3ehh

Go back to Calcium Binding Sites List in 3ehh
Calcium binding site 1 out of 2 in the Crystal Structure of Deskc-H188V in Complex with Adp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Deskc-H188V in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1

b:37.5
occ:1.00
O2A A:ADP2500 2.2 37.5 1.0
OE2 A:GLU289 2.3 46.8 1.0
OD1 A:ASN293 2.3 43.2 1.0
O A:HOH64 2.3 29.1 1.0
O A:HOH14 2.3 11.8 1.0
O3B A:ADP2500 2.4 41.6 1.0
CG A:ASN293 3.3 33.7 1.0
CD A:GLU289 3.5 38.2 1.0
PA A:ADP2500 3.5 50.3 1.0
PB A:ADP2500 3.5 47.3 1.0
ND2 A:ASN293 3.7 27.6 1.0
O3A A:ADP2500 3.7 51.6 1.0
O2B A:ADP2500 3.9 48.0 1.0
OE1 A:GLU289 4.1 40.6 1.0
NE2 A:HIS297 4.2 47.7 1.0
CA A:GLY336 4.3 40.8 1.0
O5' A:ADP2500 4.4 44.1 1.0
N A:GLY336 4.5 44.3 1.0
O1A A:ADP2500 4.6 51.0 1.0
CG A:GLU289 4.6 32.7 1.0
CB A:ASN293 4.7 31.9 1.0
CD2 A:HIS297 4.7 46.2 1.0
O1B A:ADP2500 4.8 52.5 1.0
CA A:ASN293 4.9 33.5 1.0

Calcium binding site 2 out of 2 in 3ehh

Go back to Calcium Binding Sites List in 3ehh
Calcium binding site 2 out of 2 in the Crystal Structure of Deskc-H188V in Complex with Adp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Deskc-H188V in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca2

b:38.7
occ:1.00
O2A B:ADP3500 2.2 27.9 1.0
O B:HOH63 2.3 32.5 1.0
OE2 B:GLU289 2.3 45.3 1.0
O3B B:ADP3500 2.3 44.4 1.0
OD1 B:ASN293 2.3 36.9 1.0
O B:HOH43 2.3 19.2 1.0
CG B:ASN293 3.3 36.1 1.0
PB B:ADP3500 3.5 47.5 1.0
CD B:GLU289 3.5 45.1 1.0
PA B:ADP3500 3.6 48.1 1.0
ND2 B:ASN293 3.7 28.2 1.0
O2B B:ADP3500 3.8 40.8 1.0
O3A B:ADP3500 3.8 44.2 1.0
OE1 B:GLU289 4.0 45.9 1.0
CA B:GLY336 4.3 50.0 1.0
NE2 B:HIS297 4.4 53.6 1.0
N B:GLY336 4.5 54.1 1.0
O5' B:ADP3500 4.6 39.8 1.0
CG B:GLU289 4.7 32.5 1.0
O1A B:ADP3500 4.7 41.0 1.0
CB B:ASN293 4.7 29.7 1.0
O1B B:ADP3500 4.8 52.1 1.0
CD2 B:HIS297 4.9 48.6 1.0
CG2 B:THR292 5.0 38.4 1.0
CA B:ASN293 5.0 33.4 1.0

Reference:

D.Albanesi, M.Martin, F.Trajtenberg, M.C.Mansilla, A.Haouz, P.M.Alzari, D.De Mendoza, A.Buschiazzo. Structural Plasticity and Catalysis Regulation of A Thermosensor Histidine Kinase Proc.Natl.Acad.Sci.Usa V. 106 16185 2009.
ISSN: ISSN 0027-8424
PubMed: 19805278
DOI: 10.1073/PNAS.0906699106
Page generated: Sat Jul 13 09:25:32 2024

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