Calcium in PDB 3es3: Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

Enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

All present enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant:
1.16.3.1;

Protein crystallography data

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant, PDB code: 3es3 was solved by L.Di Costanzo, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.94 / 2.80
*Space group*	F 4 3 2
*Cell size a, b, c (Å), α, β, γ (°)*	181.564, 181.564, 181.564, 90.00, 90.00, 90.00
*R / R_free (%)*	22.2 / 27.5

Other elements in 3es3:

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant also contains other interesting chemical elements:

Gold

(Au)

4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant (pdb code 3es3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant, PDB code: 3es3:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3es3

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Calcium Binding Sites List in 3es3

Calcium binding site 1 out of 2 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca735 b:34.7 occ:0.33	OE1	A:GLU134	2.2	35.3	1.0
	OD1	A:ASP131	2.3	34.8	1.0
	O	A:HOH764	3.3	30.6	0.5
	CD	A:GLU134	3.4	36.2	1.0
	CG	A:ASP131	3.4	36.6	1.0
	OE2	A:GLU134	4.0	35.5	1.0
	CB	A:ASP131	4.2	35.8	1.0
	OD2	A:ASP131	4.3	36.7	1.0
	CG	A:GLU134	4.6	35.3	1.0
	CB	A:GLU134	4.7	35.6	1.0
	CA	A:ASP131	4.7	34.3	1.0

Calcium binding site 2 out of 2 in 3es3

Go back to

Calcium Binding Sites List in 3es3

Calcium binding site 2 out of 2 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca736 b:26.9 occ:0.50	OE1	A:GLN86	3.2	27.9	1.0
	CG	A:LYS87	4.0	25.2	1.0
	CD	A:LYS87	4.4	26.2	1.0
	CD	A:GLN86	4.4	29.2	1.0
	CE	A:LYS87	5.0	27.9	1.0

Reference:

C.A.Butts, J.Swift, S.G.Kang, L.Di Costanzo, D.W.Christianson, J.G.Saven, I.J.Dmochowski. Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Biochemistry V. 47 12729 2008.
ISSN: ISSN 0006-2960
PubMed: 18991401
DOI: 10.1021/BI8016735

Page generated: Sat Jul 13 09:34:27 2024

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