Calcium in PDB 3f7o: Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646)

The structure of Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646), PDB code: 3f7o was solved by L.Liang, Z.Lou, Z.Meng, Z.Rao, K.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	65.108, 62.536, 67.562, 90.00, 92.76, 90.00
R / Rfree (%)	22.9 / 25.8

The binding sites of Calcium atom in the Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646) (pdb code 3f7o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646), PDB code: 3f7o:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca286 b:23.8 occ:1.00 OG1 A:THR182 2.6 19.9 1.0 OD2 A:ASP203 2.7 16.3 1.0 O A:VAL180 2.8 24.1 1.0 O A:LEU201 2.8 22.3 1.0 O A:GLU177 2.9 13.7 1.0 O A:HOH287 3.0 20.1 1.0 CB A:THR182 3.6 20.2 1.0 CG A:ASP203 3.6 21.3 1.0 O A:PRO178 3.7 23.5 1.0 OD1 A:ASP203 3.8 22.7 1.0 N A:THR182 3.8 19.0 1.0 C A:VAL180 3.9 22.1 1.0 C A:GLU177 3.9 16.5 1.0 O A:ALA175 3.9 15.5 1.0 C A:LEU201 4.0 20.9 1.0 CG2 A:VAL180 4.0 17.3 1.0 C A:PRO178 4.0 19.9 1.0 CA A:PRO178 4.2 17.8 1.0 O A:HOH360 4.2 30.4 1.0 CD2 A:LEU201 4.3 14.1 1.0 CA A:THR182 4.3 18.4 1.0 N A:VAL180 4.4 23.0 1.0 N A:PRO178 4.5 17.0 1.0 CA A:LEU201 4.6 21.7 1.0 CA A:VAL180 4.7 21.5 1.0 C A:CYS181 4.7 18.9 1.0 CB A:LEU201 4.7 18.5 1.0 N A:CYS181 4.8 23.7 1.0 CA A:CYS181 4.8 19.9 1.0 CG2 A:THR182 4.8 13.4 1.0 N A:THR179 4.9 19.7 1.0 CB A:VAL180 5.0 21.8 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Cuticle-Degrading Protease From Paecilomyces Lilacinus (PL646) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca286 b:27.6 occ:1.00 O B:GLU177 2.7 16.1 1.0 OG1 B:THR182 2.8 19.9 1.0 O B:LEU201 3.0 18.5 1.0 O B:VAL180 3.0 25.3 1.0 OD2 B:ASP203 3.0 21.9 1.0 O B:HOH289 3.3 16.7 1.0 CB B:THR182 3.6 21.6 1.0 CG2 B:VAL180 3.6 22.2 1.0 C B:GLU177 3.7 14.8 1.0 C B:VAL180 3.8 18.8 1.0 O B:ALA175 3.8 15.4 1.0 N B:THR182 3.8 23.5 1.0 O B:PRO178 3.9 18.0 1.0 CG B:ASP203 3.9 23.9 1.0 OD1 B:ASP203 4.0 25.3 1.0 C B:LEU201 4.1 18.8 1.0 C B:PRO178 4.2 15.8 1.0 N B:VAL180 4.2 16.6 1.0 CA B:THR182 4.3 22.7 1.0 CA B:PRO178 4.3 13.7 1.0 N B:PRO178 4.4 14.2 1.0 CA B:VAL180 4.4 17.6 1.0 N B:CYS181 4.6 18.6 1.0 CB B:LEU201 4.6 19.5 1.0 CA B:LEU201 4.6 20.9 1.0 C B:CYS181 4.7 21.2 1.0 CB B:VAL180 4.7 18.6 1.0 O B:HOH427 4.7 32.8 1.0 N B:GLU177 4.7 19.1 1.0 CA B:CYS181 4.8 19.9 1.0 CA B:GLU177 4.8 17.4 1.0 CG2 B:THR182 4.9 21.7 1.0 C B:ALA175 4.9 20.5 1.0 C B:SER176 4.9 20.1 1.0 CD2 B:LEU201 4.9 29.9 1.0 N B:THR179 5.0 13.6 1.0

L.Liang, Z.Meng, F.Ye, J.Yang, S.Liu, Y.Sun, Y.Guo, Q.Mi, X.Huang, C.Zou, Z.Rao, Z.Lou, K.Q.Zhang. The Crystal Structures of Two Cuticle-Degrading Proteases From Nematophagous Fungi and Their Contribution to Infection Against Nematodes. Faseb J. V. 24 1391 2010.
ISSN: ISSN 0892-6638
PubMed: 20007510
DOI: 10.1096/FJ.09-136408