Atomistry » Calcium » PDB 3f5v-3fib » 3fee
Atomistry »
  Calcium »
    PDB 3f5v-3fib »
      3fee »

Calcium in PDB 3fee: The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid

Enzymatic activity of The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid

All present enzymatic activity of The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid:
3.4.17.21;

Protein crystallography data

The structure of The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid, PDB code: 3fee was solved by J.Lubkowski, C.Barinka, K.Hlouchova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.56
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.985, 103.690, 77.611, 90.00, 108.27, 90.00
R / Rfree (%) 14.9 / 18.4

Other elements in 3fee:

The structure of The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid (pdb code 3fee). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid, PDB code: 3fee:

Calcium binding site 1 out of 1 in 3fee

Go back to Calcium Binding Sites List in 3fee
Calcium binding site 1 out of 1 in the The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The High Resolution Structure of Human Glutamate Carboxypeptidase III (Gcpiii/Naaladase II) in Complex with Quisqualic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1755

b:10.3
occ:1.00
 OE2 A:GLU426 2.3 11.6 1.0
O A:TYR262 2.3 10.3 1.0
O A:HOH932 2.4 9.2 1.0
O A:THR259 2.4 10.8 1.0
OG1 A:THR259 2.4 10.2 1.0
OE1 A:GLU423 2.4 10.5 1.0
OE2 A:GLU423 2.4 10.3 1.0
CD A:GLU423 2.8 9.3 1.0
C A:THR259 3.3 10.9 1.0
CB A:THR259 3.3 10.5 1.0
C A:TYR262 3.4 9.7 1.0
CD A:GLU426 3.4 11.7 1.0
CA A:THR259 3.9 10.8 1.0
OE1 A:GLU426 3.9 10.0 1.0
N A:TYR262 3.9 10.3 1.0
CB A:ASP256 4.1 10.2 1.0
CA A:PRO263 4.2 10.4 1.0
N A:PRO260 4.3 9.6 1.0
N A:ALA264 4.3 9.2 1.0
N A:PRO263 4.3 10.9 1.0
CG A:GLU423 4.3 10.1 1.0
CA A:TYR262 4.3 10.6 1.0
N A:ASP256 4.4 10.6 1.0
C A:PRO263 4.4 10.6 1.0
CA A:PRO260 4.5 9.7 1.0
N A:GLY261 4.5 9.9 1.0
O A:ASP256 4.5 11.4 1.0
O A:ALA254 4.6 12.0 1.0
N A:THR259 4.6 10.7 1.0
OD2 A:ASP256 4.7 11.5 1.0
CG2 A:THR259 4.7 11.1 1.0
CG A:GLU426 4.7 9.8 1.0
C A:PRO260 4.7 10.0 1.0
CB A:ALA264 4.8 11.2 1.0
CA A:ASP256 4.9 10.4 1.0
CB A:GLU426 4.9 9.5 1.0
C A:GLY261 4.9 11.7 1.0
CG A:ASP256 4.9 11.6 1.0
CA A:ALA264 5.0 10.0 1.0

Reference:

K.Hlouchova, C.Barinka, J.Konvalinka, J.Lubkowski. Structural Insight Into the Evolutionary and Pharmacologic Homology of Glutamate Carboxypeptidases II and III Febs J. V. 276 4448 2009.
ISSN: ISSN 1742-464X
PubMed: 19678840
DOI: 10.1111/J.1742-4658.2009.07152.X
Page generated: Sat Jul 13 09:49:12 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy