Calcium in PDB 3fg6: Structure of the C-Terminus of Adseverin

The structure of Structure of the C-Terminus of Adseverin, PDB code: 3fg6 was solved by R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.92 / 3.00
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	67.644, 90.384, 98.839, 88.79, 88.26, 76.26
R / Rfree (%)	24.4 / 29.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 23;

Binding sites:

The binding sites of Calcium atom in the Structure of the C-Terminus of Adseverin (pdb code 3fg6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 23 binding sites of Calcium where determined in the Structure of the C-Terminus of Adseverin, PDB code: 3fg6:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2001 b:64.2 occ:1.00 OE1 A:GLU449 2.6 39.4 1.0 OD1 A:ASP423 2.7 39.3 1.0 O A:GLY422 3.2 38.8 1.0 O H:GLY697 3.2 39.0 1.0 CD A:GLU449 3.7 39.2 1.0 CG A:ASP423 3.8 39.1 1.0 C H:GLY697 3.9 39.0 1.0 OE2 A:GLU449 4.0 38.9 1.0 C A:GLY422 4.1 38.8 1.0 CA H:GLY697 4.3 38.9 1.0 OD2 A:ASP423 4.3 39.3 1.0 O H:GLN696 4.4 39.1 1.0 ND1 H:HIS698 4.4 42.5 1.0 N H:HIS698 4.7 39.1 1.0 CG H:HIS698 4.7 41.2 1.0 CE1 H:HIS698 4.8 42.6 1.0 N A:ASP423 4.9 38.8 1.0 CA A:GLY422 4.9 38.8 1.0 CA A:ASP423 4.9 38.9 1.0 CB A:ASP423 4.9 38.8 1.0 CG A:GLU449 5.0 38.9 1.0 CB H:HIS698 5.0 39.4 1.0

Calcium binding site 2 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2002 b:7.7 occ:1.00 O A:ASN538 2.3 38.6 1.0 OE2 A:GLU562 2.3 37.9 1.0 OD1 A:ASN538 2.4 38.5 1.0 OD1 A:ASP539 2.5 39.4 1.0 OE1 A:GLU562 2.8 38.2 1.0 CD A:GLU562 2.9 38.1 1.0 C A:ASN538 3.2 38.7 1.0 CG A:ASN538 3.3 38.6 1.0 CG A:ASP539 3.7 39.0 1.0 CA A:ASP539 3.8 38.6 1.0 N A:ASP539 3.9 38.7 1.0 CB A:ASN538 4.0 38.6 1.0 CA A:ASN538 4.1 38.6 1.0 O A:GLY557 4.2 38.8 1.0 ND2 A:ASN538 4.2 38.9 1.0 CB A:ASP539 4.3 38.6 1.0 O A:ARG517 4.3 38.7 1.0 CG A:GLU562 4.4 38.3 1.0 CA A:ALA558 4.6 38.7 1.0 OD2 A:ASP539 4.7 39.3 1.0 N A:ARG517 4.8 38.5 1.0 N A:SER559 4.9 38.6 1.0 CG A:ARG516 4.9 38.6 1.0 OG A:SER559 5.0 38.4 1.0 NE A:ARG516 5.0 38.7 1.0 CA A:ARG516 5.0 38.5 1.0

Calcium binding site 3 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2003 b:31.8 occ:1.00 OD2 A:ASP644 2.2 38.7 1.0 OE2 A:GLU666 2.3 38.7 1.0 O A:ASP643 2.6 38.8 1.0 OE1 A:GLU666 2.8 38.4 1.0 CD A:GLU666 2.9 38.6 1.0 CG A:ASP644 3.4 38.9 1.0 OD1 A:ASN663 3.5 39.0 1.0 C A:ASP643 3.8 38.7 1.0 OG A:SER620 4.1 38.8 1.0 ND2 A:ASN621 4.1 38.8 1.0 CA A:ASP644 4.1 38.7 1.0 OD1 A:ASP644 4.2 39.0 1.0 CB A:ASP644 4.3 38.7 1.0 CG A:GLU666 4.4 38.7 1.0 N A:ASP644 4.4 38.7 1.0 O A:ASP661 4.6 38.7 1.0 OD2 A:ASP643 4.6 39.3 1.0 N A:ASN663 4.7 38.7 1.0 N A:ASN621 4.7 38.7 1.0 CG A:ASN663 4.7 38.7 1.0 CA A:ALA662 4.7 38.8 1.0 CB A:ASP643 4.8 38.9 1.0 CB A:LYS622 4.8 38.7 1.0 CB A:SER620 4.8 38.8 1.0 N A:LYS622 4.8 38.6 1.0 CG A:ASP643 4.9 39.1 1.0 CA A:ASP643 4.9 38.8 1.0 CA A:SER620 5.0 38.8 1.0

Calcium binding site 4 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2001 b:71.7 occ:1.00 OE1 C:GLU449 2.9 39.4 1.0 CD C:GLU449 3.5 39.3 1.0 OE2 C:GLU449 3.5 39.1 1.0 O C:GLY422 4.1 38.8 1.0 OD1 C:ASP423 4.6 39.2 1.0 CG2 C:THR446 4.7 38.6 1.0 CG C:GLU449 4.7 38.9 1.0 OG1 C:THR446 4.8 38.8 1.0

Calcium binding site 5 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2002 b:26.0 occ:1.00 O C:ASN538 2.3 38.7 1.0 OE2 C:GLU562 2.3 38.0 1.0 OD1 C:ASP539 2.4 39.3 1.0 OD1 C:ASN538 2.5 38.6 1.0 OE1 C:GLU562 2.8 38.5 1.0 CD C:GLU562 2.9 38.3 1.0 C C:ASN538 3.2 38.7 1.0 CG C:ASN538 3.4 38.7 1.0 CG C:ASP539 3.6 39.0 1.0 CA C:ASP539 3.8 38.7 1.0 N C:ASP539 3.9 38.8 1.0 CB C:ASN538 4.0 38.6 1.0 O C:GLY557 4.1 38.7 1.0 CA C:ASN538 4.2 38.7 1.0 CB C:ASP539 4.2 38.6 1.0 O C:ARG517 4.3 38.8 1.0 ND2 C:ASN538 4.3 38.9 1.0 CG C:GLU562 4.4 38.5 1.0 OD2 C:ASP539 4.5 39.3 1.0 CA C:ALA558 4.6 38.6 1.0 N C:ARG517 4.7 38.5 1.0 CG C:ARG516 4.8 38.6 1.0 CA C:ARG516 4.8 38.5 1.0 NE C:ARG516 4.8 38.7 1.0 N C:SER559 4.9 38.7 1.0 CB C:ARG516 4.9 38.5 1.0

Calcium binding site 6 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2003 b:33.9 occ:1.00 O C:ASP643 2.4 38.7 1.0 OD2 C:ASP644 2.5 38.7 1.0 OE2 C:GLU666 2.6 38.7 1.0 OE1 C:GLU666 2.8 38.4 1.0 CD C:GLU666 3.1 38.6 1.0 OD1 C:ASN663 3.5 39.0 1.0 C C:ASP643 3.6 38.7 1.0 CG C:ASP644 3.6 38.8 1.0 O C:ASP661 4.1 38.7 1.0 CA C:ASP644 4.2 38.7 1.0 ND2 C:ASN621 4.3 38.8 1.0 N C:ASP644 4.3 38.7 1.0 OD1 C:ASP644 4.4 38.9 1.0 OG C:SER620 4.5 38.8 1.0 CB C:ASP644 4.5 38.7 1.0 CA C:ALA662 4.5 38.8 1.0 N C:ASN663 4.5 38.8 1.0 OD2 C:ASP643 4.5 39.3 1.0 CB C:ASP643 4.5 38.9 1.0 CG C:GLU666 4.6 38.7 1.0 CA C:ASP643 4.7 38.8 1.0 CG C:ASN663 4.7 38.7 1.0 CG C:ASP643 4.7 39.1 1.0 C C:ALA662 5.0 38.8 1.0 C C:ASP661 5.0 38.7 1.0

Calcium binding site 7 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca2001 b:39.0 occ:1.00 OE1 G:GLU449 2.4 39.3 1.0 O G:GLY422 2.9 38.8 1.0 OD1 G:ASP423 3.1 39.4 1.0 CD G:GLU449 3.4 39.1 1.0 OE2 G:GLU449 3.7 38.9 1.0 C G:GLY422 3.9 38.8 1.0 CG G:ASP423 4.3 39.0 1.0 CA G:GLY422 4.6 38.8 1.0 CG G:GLU449 4.7 38.8 1.0 N G:ASP423 4.8 38.8 1.0 CA G:ASP423 4.9 38.9 1.0 OE1 H:GLU404 4.9 36.9 1.0

Calcium binding site 8 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca2002 b:15.7 occ:1.00 O G:ASN538 2.3 38.7 1.0 OE2 G:GLU562 2.3 38.1 1.0 OD1 G:ASN538 2.4 38.6 1.0 OD1 G:ASP539 2.5 39.3 1.0 OE1 G:GLU562 2.9 38.5 1.0 CD G:GLU562 2.9 38.4 1.0 C G:ASN538 3.2 38.7 1.0 CG G:ASN538 3.3 38.6 1.0 CG G:ASP539 3.7 39.0 1.0 N G:ASP539 3.9 38.7 1.0 CA G:ASP539 3.9 38.6 1.0 CB G:ASN538 3.9 38.6 1.0 CA G:ASN538 4.1 38.7 1.0 ND2 G:ASN538 4.2 38.8 1.0 O G:GLY557 4.2 38.8 1.0 O G:ARG517 4.3 38.9 1.0 CB G:ASP539 4.4 38.6 1.0 CG G:GLU562 4.4 38.5 1.0 CA G:ALA558 4.7 38.7 1.0 OD2 G:ASP539 4.7 39.3 1.0 N G:ARG517 4.9 38.5 1.0 CG G:ARG516 4.9 38.6 1.0 N G:SER559 4.9 38.7 1.0 OG G:SER559 5.0 38.5 1.0 NE G:ARG516 5.0 38.7 1.0

Calcium binding site 9 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca2003 b:28.8 occ:1.00 OD2 G:ASP644 2.5 38.6 1.0 O G:ASP643 2.6 38.8 1.0 OE2 G:GLU666 2.7 38.7 1.0 OE1 G:GLU666 3.1 38.4 1.0 CD G:GLU666 3.3 38.7 1.0 CG G:ASP644 3.6 38.8 1.0 OD1 G:ASN663 3.7 39.1 1.0 C G:ASP643 3.8 38.7 1.0 ND2 G:ASN621 4.3 38.8 1.0 OG G:SER620 4.4 38.8 1.0 OD2 G:ASP643 4.4 39.3 1.0 OD1 G:ASP644 4.4 39.0 1.0 O G:ASP661 4.4 38.8 1.0 CA G:ASP644 4.4 38.7 1.0 N G:ASP644 4.6 38.7 1.0 CB G:ASP643 4.6 38.9 1.0 CB G:ASP644 4.6 38.7 1.0 CG G:ASP643 4.6 39.1 1.0 CB G:LYS622 4.7 38.6 1.0 CG G:GLU666 4.8 38.7 1.0 CA G:ASP643 4.8 38.8 1.0 CA G:ALA662 4.8 38.8 1.0 N G:ASN663 4.9 38.8 1.0 CG G:ASN663 4.9 38.7 1.0 N G:LYS622 5.0 38.7 1.0

Calcium binding site 10 out of 23 in the Structure of the C-Terminus of Adseverin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of the C-Terminus of Adseverin within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca2001 b:41.4 occ:1.00 OE1 E:GLU449 2.2 39.3 1.0 O E:GLY422 2.8 38.9 1.0 OD1 E:ASP423 2.9 39.3 1.0 CD E:GLU449 3.1 39.1 1.0 OE2 E:GLU449 3.3 38.9 1.0 OD1 F:ASP423 3.5 39.2 1.0 OE1 F:GLU449 3.7 39.3 1.0 C E:GLY422 3.8 38.8 1.0 CG E:ASP423 4.1 39.1 1.0 NH2 F:ARG402 4.2 41.5 1.0 CG F:ASP423 4.4 39.1 1.0 OD2 F:ASP423 4.5 39.4 1.0 CG E:GLU449 4.5 38.9 1.0 CA E:GLY422 4.6 38.7 1.0 N E:ASP423 4.7 38.8 1.0 OD2 E:ASP423 4.8 39.4 1.0 CA E:ASP423 4.8 38.9 1.0 CD F:GLU449 4.9 39.1 1.0 CZ F:ARG402 4.9 41.7 1.0 NH1 F:ARG402 5.0 42.2 1.0

S.Chumnarnsilpa, W.L.Lee, S.Nag, B.Kannan, M.Larsson, L.D.Burtnick, R.C.Robinson. The Crystal Structure of the C-Terminus of Adseverin Reveals the Actin-Binding Interface. Proc.Natl.Acad.Sci.Usa V. 106 13719 2009.
ISSN: ISSN 0027-8424
PubMed: 19666531
DOI: 10.1073/PNAS.0812383106