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Calcium in PDB 3fkh: Crystal Structure of Putative Pyridoxamine 5'-Phosphate Oxidase (NP_601736.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 2.51 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Pyridoxamine 5'-Phosphate Oxidase (NP_601736.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 2.51 A Resolution, PDB code: 3fkh was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.54 / 2.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.630, 88.310, 138.170, 90.00, 90.00, 90.00
R / Rfree (%) 24.3 / 28.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Putative Pyridoxamine 5'-Phosphate Oxidase (NP_601736.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 2.51 A Resolution (pdb code 3fkh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Putative Pyridoxamine 5'-Phosphate Oxidase (NP_601736.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 2.51 A Resolution, PDB code: 3fkh:

Calcium binding site 1 out of 1 in 3fkh

Go back to Calcium Binding Sites List in 3fkh
Calcium binding site 1 out of 1 in the Crystal Structure of Putative Pyridoxamine 5'-Phosphate Oxidase (NP_601736.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 2.51 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Pyridoxamine 5'-Phosphate Oxidase (NP_601736.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 2.51 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca138

b:65.1
occ:1.00
OD1 C:ASN6 2.5 64.1 1.0
CG C:ASN6 3.5 60.6 1.0
O C:ILE7 3.7 51.4 1.0
CB F:SER19 3.8 46.4 1.0
ND2 C:ASN6 3.9 61.4 1.0
OE1 F:GLU72 4.1 43.8 1.0
NZ F:LYS74 4.2 60.2 1.0
OG F:SER19 4.2 45.1 1.0
OE2 F:GLU72 4.6 49.3 1.0
O F:SER19 4.7 47.4 1.0
OE1 C:GLU12 4.7 44.6 1.0
OE2 C:GLU12 4.8 53.4 1.0
C C:ILE7 4.8 51.4 1.0
CD F:GLU72 4.8 49.1 1.0
CB C:ASN6 4.9 58.4 1.0
CD F:LYS74 4.9 57.6 1.0
CA F:SER19 4.9 47.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 04:11:50 2020

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