Calcium in PDB 3fmg: Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab

The structure of Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab, PDB code: 3fmg was solved by S.T.Aoki, E.C.Settembre, S.D.Trask, H.B.Greenberg, S.C.Harrison, P.R.Dormitzer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 3.40
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	244.179, 244.179, 244.179, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 23.8

The binding sites of Calcium atom in the Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab (pdb code 3fmg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab, PDB code: 3fmg:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca327 b:89.8 occ:1.00 OD2 A:ASP301 2.7 73.5 1.0 CG A:ASP301 3.8 73.5 1.0 OD1 A:ASP301 4.2 73.5 1.0 CB A:ASP301 5.0 73.5 1.0

Calcium binding site 2 out of 2 in the Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Rotavirus Outer Capsid Protein VP7 Trimer in Complex with A Neutralizing Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca328 b:75.6 occ:1.00 OD2 A:ASP95 2.4 85.8 1.0 CG A:ASP95 3.5 85.8 1.0 CB A:ASP95 4.2 85.8 1.0 OD1 A:ASP95 4.3 85.8 1.0

S.T.Aoki, E.C.Settembre, S.D.Trask, H.B.Greenberg, S.C.Harrison, P.R.Dormitzer. Structure of Rotavirus Outer-Layer Protein VP7 Bound with A Neutralizing Fab. Science V. 324 1444 2009.
ISSN: ISSN 0036-8075
PubMed: 19520960
DOI: 10.1126/SCIENCE.1170481