Calcium in PDB 3fs7: Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Protein crystallography data
The structure of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone), PDB code: 3fs7
was solved by
J.P.Schuermann,
J.J.Tanner,
M.T.Henzl,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.63 /
1.95
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.644,
51.560,
67.633,
87.42,
85.42,
87.42
|
R / Rfree (%)
|
16.4 /
22.1
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
(pdb code 3fs7). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone), PDB code: 3fs7:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 1 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca110
b:20.1
occ:1.00
|
OD1
|
A:ASP51
|
2.5
|
16.1
|
1.0
|
O
|
A:PHE57
|
2.5
|
14.2
|
1.0
|
OE1
|
A:GLU59
|
2.5
|
21.2
|
1.0
|
OD1
|
A:ASP53
|
2.6
|
26.8
|
1.0
|
OG
|
A:SER55
|
2.6
|
15.3
|
1.0
|
OE1
|
A:GLU62
|
2.6
|
22.5
|
1.0
|
OE2
|
A:GLU62
|
2.7
|
20.0
|
1.0
|
CD
|
A:GLU62
|
3.0
|
25.0
|
1.0
|
CD
|
A:GLU59
|
3.4
|
22.3
|
1.0
|
CG
|
A:ASP53
|
3.4
|
23.5
|
1.0
|
OE2
|
A:GLU59
|
3.5
|
17.9
|
1.0
|
CG
|
A:ASP51
|
3.5
|
19.3
|
1.0
|
CB
|
A:SER55
|
3.6
|
22.0
|
1.0
|
C
|
A:PHE57
|
3.7
|
18.4
|
1.0
|
OD2
|
A:ASP53
|
3.8
|
23.9
|
1.0
|
N
|
A:SER55
|
3.9
|
15.2
|
1.0
|
CA
|
A:ASP51
|
4.1
|
13.8
|
1.0
|
N
|
A:ASP53
|
4.2
|
18.3
|
1.0
|
O
|
A:HOH370
|
4.2
|
39.0
|
1.0
|
OD2
|
A:ASP51
|
4.3
|
23.5
|
1.0
|
CB
|
A:ASP51
|
4.3
|
23.2
|
1.0
|
CA
|
A:SER55
|
4.3
|
19.6
|
1.0
|
C
|
A:ASP51
|
4.3
|
21.6
|
1.0
|
N
|
A:GLU59
|
4.3
|
18.6
|
1.0
|
N
|
A:LYS54
|
4.4
|
17.9
|
1.0
|
N
|
A:PHE57
|
4.4
|
15.8
|
1.0
|
N
|
A:GLN52
|
4.4
|
17.5
|
1.0
|
CA
|
A:ILE58
|
4.4
|
18.9
|
1.0
|
CB
|
A:ASP53
|
4.5
|
15.3
|
1.0
|
CG
|
A:GLU62
|
4.5
|
26.7
|
1.0
|
N
|
A:ILE58
|
4.5
|
16.9
|
1.0
|
CA
|
A:ASP53
|
4.6
|
23.4
|
1.0
|
C
|
A:ASP53
|
4.6
|
17.8
|
1.0
|
CA
|
A:PHE57
|
4.7
|
16.0
|
1.0
|
CG
|
A:GLU59
|
4.7
|
14.6
|
1.0
|
N
|
A:GLY56
|
4.8
|
13.6
|
1.0
|
O
|
A:ASP51
|
4.8
|
18.6
|
1.0
|
C
|
A:SER55
|
4.9
|
16.7
|
1.0
|
C
|
A:ILE58
|
4.9
|
16.1
|
1.0
|
C
|
A:LYS54
|
5.0
|
24.0
|
1.0
|
|
Calcium binding site 2 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 2 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca111
b:21.3
occ:1.00
|
OD1
|
A:ASP94
|
2.5
|
17.6
|
1.0
|
O
|
A:LYS96
|
2.5
|
25.4
|
1.0
|
OD1
|
A:ASP92
|
2.6
|
23.4
|
1.0
|
OD1
|
A:ASP90
|
2.6
|
16.5
|
1.0
|
OE1
|
A:GLU101
|
2.6
|
22.3
|
1.0
|
O
|
A:HOH120
|
2.7
|
20.7
|
1.0
|
OE2
|
A:GLU101
|
2.7
|
22.7
|
1.0
|
CD
|
A:GLU101
|
3.0
|
20.8
|
1.0
|
CG
|
A:ASP94
|
3.2
|
25.2
|
1.0
|
CG
|
A:ASP92
|
3.4
|
24.0
|
1.0
|
OD2
|
A:ASP94
|
3.5
|
24.5
|
1.0
|
C
|
A:LYS96
|
3.6
|
25.9
|
1.0
|
CG
|
A:ASP90
|
3.6
|
21.5
|
1.0
|
OD2
|
A:ASP92
|
3.7
|
33.8
|
1.0
|
N
|
A:ASP94
|
4.2
|
17.8
|
1.0
|
CA
|
A:ASP90
|
4.2
|
16.9
|
1.0
|
N
|
A:LYS96
|
4.2
|
25.3
|
1.0
|
CA
|
A:ILE97
|
4.4
|
7.5
|
1.0
|
CB
|
A:ASP90
|
4.4
|
24.3
|
1.0
|
N
|
A:ILE97
|
4.4
|
17.6
|
1.0
|
N
|
A:ASP92
|
4.4
|
19.1
|
1.0
|
CB
|
A:ASP94
|
4.4
|
24.8
|
1.0
|
N
|
A:GLY98
|
4.4
|
16.8
|
1.0
|
CA
|
A:LYS96
|
4.5
|
25.8
|
1.0
|
N
|
A:GLY93
|
4.5
|
25.4
|
1.0
|
CG
|
A:GLU101
|
4.5
|
14.1
|
1.0
|
OD2
|
A:ASP90
|
4.5
|
22.6
|
1.0
|
C
|
A:ASP90
|
4.5
|
25.0
|
1.0
|
N
|
A:THR91
|
4.6
|
27.1
|
1.0
|
CG
|
A:LYS96
|
4.6
|
27.5
|
1.0
|
CB
|
A:ASP92
|
4.7
|
15.8
|
1.0
|
CA
|
A:ASP94
|
4.7
|
16.4
|
1.0
|
N
|
A:GLY95
|
4.8
|
23.2
|
1.0
|
CA
|
A:ASP92
|
4.9
|
18.3
|
1.0
|
C
|
A:ASP92
|
4.9
|
25.5
|
1.0
|
C
|
A:ILE97
|
4.9
|
12.5
|
1.0
|
C
|
A:ASP94
|
4.9
|
21.9
|
1.0
|
|
Calcium binding site 3 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 3 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca110
b:19.3
occ:1.00
|
O
|
B:PHE57
|
2.5
|
12.3
|
1.0
|
OE1
|
B:GLU59
|
2.5
|
19.6
|
1.0
|
OD1
|
B:ASP51
|
2.6
|
25.0
|
1.0
|
OD1
|
B:ASP53
|
2.6
|
30.6
|
1.0
|
OE1
|
B:GLU62
|
2.6
|
19.7
|
1.0
|
OG
|
B:SER55
|
2.6
|
14.2
|
1.0
|
OE2
|
B:GLU62
|
2.7
|
18.5
|
1.0
|
CD
|
B:GLU62
|
2.9
|
22.1
|
1.0
|
CD
|
B:GLU59
|
3.4
|
26.1
|
1.0
|
CG
|
B:ASP53
|
3.4
|
25.4
|
1.0
|
CG
|
B:ASP51
|
3.5
|
20.5
|
1.0
|
OE2
|
B:GLU59
|
3.6
|
22.0
|
1.0
|
CB
|
B:SER55
|
3.6
|
21.2
|
1.0
|
OD2
|
B:ASP53
|
3.7
|
19.6
|
1.0
|
C
|
B:PHE57
|
3.7
|
17.2
|
1.0
|
N
|
B:SER55
|
4.0
|
18.6
|
1.0
|
CA
|
B:ASP51
|
4.0
|
19.9
|
1.0
|
CB
|
B:ASP51
|
4.2
|
17.2
|
1.0
|
N
|
B:GLU59
|
4.3
|
13.6
|
1.0
|
C
|
B:ASP51
|
4.3
|
21.7
|
1.0
|
CA
|
B:ILE58
|
4.4
|
10.4
|
1.0
|
CA
|
B:SER55
|
4.4
|
20.2
|
1.0
|
CG
|
B:GLU62
|
4.4
|
15.7
|
1.0
|
OD2
|
B:ASP51
|
4.4
|
22.1
|
1.0
|
N
|
B:ASP53
|
4.4
|
18.1
|
1.0
|
N
|
B:PHE57
|
4.4
|
17.1
|
1.0
|
O
|
B:HOH369
|
4.5
|
23.8
|
1.0
|
N
|
B:ILE58
|
4.5
|
9.3
|
1.0
|
N
|
B:GLN52
|
4.6
|
26.3
|
1.0
|
N
|
B:LYS54
|
4.6
|
26.6
|
1.0
|
CB
|
B:ASP53
|
4.7
|
17.2
|
1.0
|
CA
|
B:PHE57
|
4.7
|
12.6
|
1.0
|
CG
|
B:GLU59
|
4.7
|
28.7
|
1.0
|
O
|
B:ASP51
|
4.8
|
24.0
|
1.0
|
C
|
B:ILE58
|
4.8
|
16.0
|
1.0
|
CA
|
B:ASP53
|
4.9
|
18.3
|
1.0
|
C
|
B:ASP53
|
4.9
|
15.7
|
1.0
|
N
|
B:GLY56
|
4.9
|
23.6
|
1.0
|
C
|
B:SER55
|
4.9
|
26.9
|
1.0
|
O
|
B:HOH190
|
5.0
|
28.3
|
1.0
|
|
Calcium binding site 4 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 4 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca111
b:26.9
occ:1.00
|
OD1
|
B:ASP90
|
2.6
|
21.0
|
1.0
|
OD1
|
B:ASP94
|
2.6
|
27.7
|
1.0
|
O
|
B:LYS96
|
2.6
|
18.9
|
1.0
|
OE1
|
B:GLU101
|
2.6
|
22.7
|
1.0
|
OD1
|
B:ASP92
|
2.7
|
45.0
|
1.0
|
O
|
B:HOH203
|
2.8
|
30.0
|
1.0
|
OE2
|
B:GLU101
|
2.8
|
16.2
|
1.0
|
CD
|
B:GLU101
|
3.1
|
26.7
|
1.0
|
CG
|
B:ASP92
|
3.3
|
43.3
|
1.0
|
OD2
|
B:ASP92
|
3.3
|
43.5
|
1.0
|
CG
|
B:ASP94
|
3.3
|
29.6
|
1.0
|
CG
|
B:ASP90
|
3.6
|
24.2
|
1.0
|
C
|
B:LYS96
|
3.6
|
24.6
|
1.0
|
OD2
|
B:ASP94
|
3.7
|
33.6
|
1.0
|
O
|
B:HOH123
|
4.0
|
25.3
|
1.0
|
N
|
B:ASP94
|
4.1
|
33.8
|
1.0
|
N
|
B:LYS96
|
4.3
|
25.5
|
1.0
|
CA
|
B:ASP90
|
4.3
|
24.5
|
1.0
|
OD2
|
B:ASP90
|
4.3
|
34.4
|
1.0
|
CB
|
B:ASP90
|
4.3
|
16.1
|
1.0
|
N
|
B:ILE97
|
4.3
|
15.3
|
1.0
|
CA
|
B:ILE97
|
4.3
|
8.1
|
1.0
|
N
|
B:ASP92
|
4.4
|
36.2
|
1.0
|
N
|
B:GLY93
|
4.4
|
45.5
|
1.0
|
CB
|
B:ASP94
|
4.4
|
28.1
|
1.0
|
CA
|
B:LYS96
|
4.5
|
22.7
|
1.0
|
CB
|
B:ASP92
|
4.5
|
37.0
|
1.0
|
CG
|
B:LYS96
|
4.5
|
23.9
|
1.0
|
N
|
B:GLY98
|
4.6
|
18.7
|
1.0
|
CG
|
B:GLU101
|
4.6
|
22.4
|
1.0
|
N
|
B:THR91
|
4.6
|
32.4
|
1.0
|
C
|
B:ASP92
|
4.6
|
46.9
|
1.0
|
CA
|
B:ASP94
|
4.7
|
28.3
|
1.0
|
CA
|
B:ASP92
|
4.7
|
39.2
|
1.0
|
N
|
B:GLY95
|
4.8
|
28.2
|
1.0
|
C
|
B:ASP90
|
4.8
|
28.6
|
1.0
|
C
|
B:ILE97
|
4.9
|
18.8
|
1.0
|
C
|
B:ASP94
|
5.0
|
28.0
|
1.0
|
|
Calcium binding site 5 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 5 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca110
b:16.5
occ:1.00
|
O
|
C:PHE57
|
2.4
|
11.4
|
1.0
|
OE1
|
C:GLU59
|
2.5
|
11.9
|
1.0
|
OD1
|
C:ASP51
|
2.5
|
18.2
|
1.0
|
OG
|
C:SER55
|
2.6
|
15.2
|
1.0
|
OD1
|
C:ASP53
|
2.6
|
18.2
|
1.0
|
OE1
|
C:GLU62
|
2.6
|
12.4
|
1.0
|
OE2
|
C:GLU62
|
2.7
|
13.0
|
1.0
|
CD
|
C:GLU62
|
3.0
|
17.6
|
1.0
|
CD
|
C:GLU59
|
3.2
|
21.5
|
1.0
|
OE2
|
C:GLU59
|
3.3
|
14.0
|
1.0
|
CG
|
C:ASP53
|
3.5
|
18.5
|
1.0
|
CG
|
C:ASP51
|
3.5
|
24.0
|
1.0
|
CB
|
C:SER55
|
3.6
|
22.6
|
1.0
|
C
|
C:PHE57
|
3.6
|
10.1
|
1.0
|
OD2
|
C:ASP53
|
3.8
|
17.6
|
1.0
|
N
|
C:SER55
|
3.8
|
25.3
|
1.0
|
CA
|
C:ASP51
|
4.1
|
15.7
|
1.0
|
OD2
|
C:ASP51
|
4.2
|
23.9
|
1.0
|
N
|
C:GLU59
|
4.3
|
11.2
|
1.0
|
CA
|
C:SER55
|
4.3
|
20.7
|
1.0
|
N
|
C:ASP53
|
4.3
|
17.5
|
1.0
|
C
|
C:ASP51
|
4.3
|
17.4
|
1.0
|
O
|
C:HOH232
|
4.3
|
19.8
|
1.0
|
CB
|
C:ASP51
|
4.3
|
13.2
|
1.0
|
N
|
C:PHE57
|
4.4
|
16.5
|
1.0
|
N
|
C:LYS54
|
4.4
|
15.9
|
1.0
|
CA
|
C:ILE58
|
4.4
|
13.7
|
1.0
|
CG
|
C:GLU62
|
4.4
|
16.3
|
1.0
|
N
|
C:GLN52
|
4.5
|
25.4
|
1.0
|
N
|
C:ILE58
|
4.5
|
11.2
|
1.0
|
CA
|
C:PHE57
|
4.6
|
18.7
|
1.0
|
CG
|
C:GLU59
|
4.6
|
13.8
|
1.0
|
CB
|
C:ASP53
|
4.6
|
13.6
|
1.0
|
C
|
C:ASP53
|
4.7
|
21.2
|
1.0
|
CA
|
C:ASP53
|
4.7
|
18.8
|
1.0
|
O
|
C:ASP51
|
4.8
|
14.7
|
1.0
|
N
|
C:GLY56
|
4.8
|
21.6
|
1.0
|
C
|
C:ILE58
|
4.9
|
12.8
|
1.0
|
C
|
C:SER55
|
4.9
|
20.5
|
1.0
|
C
|
C:LYS54
|
4.9
|
24.1
|
1.0
|
CB
|
C:GLU59
|
5.0
|
12.6
|
1.0
|
|
Calcium binding site 6 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 6 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca111
b:16.9
occ:1.00
|
O
|
C:LYS96
|
2.4
|
11.1
|
1.0
|
OD1
|
C:ASP90
|
2.5
|
17.8
|
1.0
|
OD1
|
C:ASP94
|
2.5
|
13.0
|
1.0
|
OE1
|
C:GLU101
|
2.6
|
22.7
|
1.0
|
OD1
|
C:ASP92
|
2.6
|
20.8
|
1.0
|
O
|
C:HOH131
|
2.7
|
22.4
|
1.0
|
OE2
|
C:GLU101
|
2.7
|
18.1
|
1.0
|
CD
|
C:GLU101
|
3.0
|
24.4
|
1.0
|
CG
|
C:ASP94
|
3.2
|
18.2
|
1.0
|
CG
|
C:ASP92
|
3.2
|
24.4
|
1.0
|
OD2
|
C:ASP92
|
3.3
|
26.6
|
1.0
|
CG
|
C:ASP90
|
3.5
|
17.6
|
1.0
|
C
|
C:LYS96
|
3.5
|
14.2
|
1.0
|
OD2
|
C:ASP94
|
3.6
|
19.0
|
1.0
|
N
|
C:ASP94
|
4.0
|
18.3
|
1.0
|
O
|
C:HOH274
|
4.1
|
26.8
|
1.0
|
CA
|
C:ASP90
|
4.2
|
15.1
|
1.0
|
N
|
C:LYS96
|
4.2
|
11.7
|
1.0
|
CB
|
C:ASP90
|
4.2
|
15.6
|
1.0
|
CB
|
C:ASP94
|
4.3
|
26.5
|
1.0
|
CA
|
C:ILE97
|
4.4
|
13.5
|
1.0
|
N
|
C:ILE97
|
4.4
|
12.9
|
1.0
|
N
|
C:ASP92
|
4.4
|
19.7
|
1.0
|
N
|
C:GLY93
|
4.4
|
24.8
|
1.0
|
OD2
|
C:ASP90
|
4.4
|
22.1
|
1.0
|
CA
|
C:LYS96
|
4.5
|
12.7
|
1.0
|
CB
|
C:ASP92
|
4.5
|
19.8
|
1.0
|
CG
|
C:GLU101
|
4.5
|
18.4
|
1.0
|
C
|
C:ASP90
|
4.5
|
14.8
|
1.0
|
N
|
C:GLY98
|
4.6
|
14.3
|
1.0
|
CA
|
C:ASP94
|
4.6
|
20.3
|
1.0
|
CG
|
C:LYS96
|
4.7
|
20.5
|
1.0
|
N
|
C:GLY95
|
4.7
|
17.7
|
1.0
|
C
|
C:ASP92
|
4.7
|
25.9
|
1.0
|
CA
|
C:ASP92
|
4.7
|
20.2
|
1.0
|
N
|
C:THR91
|
4.8
|
17.2
|
1.0
|
C
|
C:ASP94
|
4.9
|
17.2
|
1.0
|
C
|
C:ILE97
|
5.0
|
12.2
|
1.0
|
|
Calcium binding site 7 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 7 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca110
b:17.6
occ:1.00
|
O
|
D:PHE57
|
2.4
|
11.3
|
1.0
|
OD1
|
D:ASP51
|
2.5
|
13.8
|
1.0
|
OE1
|
D:GLU59
|
2.5
|
19.1
|
1.0
|
OE1
|
D:GLU62
|
2.6
|
14.3
|
1.0
|
OD1
|
D:ASP53
|
2.6
|
27.3
|
1.0
|
OG
|
D:SER55
|
2.7
|
14.4
|
1.0
|
OE2
|
D:GLU62
|
2.7
|
15.3
|
1.0
|
CD
|
D:GLU62
|
3.0
|
18.6
|
1.0
|
CD
|
D:GLU59
|
3.4
|
22.1
|
1.0
|
CG
|
D:ASP53
|
3.5
|
24.1
|
1.0
|
CG
|
D:ASP51
|
3.5
|
18.1
|
1.0
|
OE2
|
D:GLU59
|
3.6
|
18.5
|
1.0
|
C
|
D:PHE57
|
3.6
|
16.6
|
1.0
|
CB
|
D:SER55
|
3.6
|
15.9
|
1.0
|
N
|
D:SER55
|
3.8
|
11.7
|
1.0
|
OD2
|
D:ASP53
|
3.9
|
32.8
|
1.0
|
O
|
D:HOH130
|
4.1
|
36.8
|
1.0
|
CA
|
D:ASP51
|
4.1
|
12.7
|
1.0
|
N
|
D:GLU59
|
4.2
|
16.8
|
1.0
|
N
|
D:ASP53
|
4.2
|
12.9
|
1.0
|
CB
|
D:ASP51
|
4.3
|
17.2
|
1.0
|
CA
|
D:SER55
|
4.3
|
14.3
|
1.0
|
N
|
D:PHE57
|
4.3
|
11.0
|
1.0
|
C
|
D:ASP51
|
4.3
|
10.4
|
1.0
|
OD2
|
D:ASP51
|
4.4
|
18.3
|
1.0
|
N
|
D:LYS54
|
4.4
|
15.8
|
1.0
|
CG
|
D:GLU62
|
4.4
|
12.4
|
1.0
|
CA
|
D:ILE58
|
4.4
|
12.8
|
1.0
|
N
|
D:ILE58
|
4.5
|
9.3
|
1.0
|
N
|
D:GLN52
|
4.5
|
13.6
|
1.0
|
CA
|
D:PHE57
|
4.5
|
8.9
|
1.0
|
CB
|
D:ASP53
|
4.6
|
18.2
|
1.0
|
C
|
D:ASP53
|
4.6
|
18.8
|
1.0
|
CA
|
D:ASP53
|
4.7
|
16.2
|
1.0
|
N
|
D:GLY56
|
4.7
|
8.0
|
1.0
|
CG
|
D:GLU59
|
4.7
|
17.8
|
1.0
|
O
|
D:ASP51
|
4.8
|
11.2
|
1.0
|
C
|
D:ILE58
|
4.8
|
13.0
|
1.0
|
C
|
D:SER55
|
4.9
|
16.0
|
1.0
|
C
|
D:LYS54
|
4.9
|
17.0
|
1.0
|
CB
|
D:GLU59
|
4.9
|
15.3
|
1.0
|
|
Calcium binding site 8 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 8 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca111
b:17.6
occ:1.00
|
OD2
|
D:ASP90
|
2.4
|
15.2
|
1.0
|
O
|
D:LYS96
|
2.5
|
13.7
|
1.0
|
OD1
|
D:ASP94
|
2.6
|
20.9
|
1.0
|
OE1
|
D:GLU101
|
2.6
|
19.8
|
1.0
|
O
|
D:HOH351
|
2.6
|
21.4
|
1.0
|
OD1
|
D:ASP92
|
2.7
|
18.7
|
1.0
|
OE2
|
D:GLU101
|
2.7
|
17.2
|
1.0
|
CD
|
D:GLU101
|
3.0
|
18.8
|
1.0
|
CG
|
D:ASP94
|
3.2
|
23.2
|
1.0
|
OD2
|
D:ASP94
|
3.5
|
22.8
|
1.0
|
CG
|
D:ASP90
|
3.5
|
24.1
|
1.0
|
CG
|
D:ASP92
|
3.6
|
25.7
|
1.0
|
C
|
D:LYS96
|
3.6
|
19.1
|
1.0
|
OD2
|
D:ASP92
|
3.9
|
27.3
|
1.0
|
CA
|
D:ASP90
|
4.1
|
17.0
|
1.0
|
N
|
D:ASP94
|
4.2
|
16.9
|
1.0
|
CB
|
D:ASP90
|
4.2
|
18.0
|
1.0
|
N
|
D:LYS96
|
4.2
|
22.3
|
1.0
|
CB
|
D:ASP94
|
4.4
|
20.2
|
1.0
|
N
|
D:ASP92
|
4.4
|
27.9
|
1.0
|
C3
|
D:GOL112
|
4.4
|
29.5
|
1.0
|
CA
|
D:ILE97
|
4.4
|
13.4
|
1.0
|
N
|
D:ILE97
|
4.4
|
12.3
|
1.0
|
OD1
|
D:ASP90
|
4.4
|
18.7
|
1.0
|
CA
|
D:LYS96
|
4.5
|
22.7
|
1.0
|
CG
|
D:GLU101
|
4.5
|
21.0
|
1.0
|
C
|
D:ASP90
|
4.5
|
22.6
|
1.0
|
N
|
D:GLY98
|
4.5
|
15.2
|
1.0
|
N
|
D:GLY93
|
4.5
|
26.1
|
1.0
|
N
|
D:THR91
|
4.6
|
18.7
|
1.0
|
CA
|
D:ASP94
|
4.7
|
19.9
|
1.0
|
CB
|
D:ASP92
|
4.8
|
27.7
|
1.0
|
N
|
D:GLY95
|
4.8
|
16.8
|
1.0
|
O3
|
D:GOL112
|
4.8
|
42.8
|
1.0
|
C
|
D:ASP92
|
4.8
|
28.6
|
1.0
|
CA
|
D:ASP92
|
4.8
|
26.9
|
1.0
|
CG
|
D:LYS96
|
4.9
|
23.1
|
1.0
|
C
|
D:ILE97
|
4.9
|
17.3
|
1.0
|
C
|
D:ASP94
|
5.0
|
24.3
|
1.0
|
|
Calcium binding site 9 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 9 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca110
b:17.8
occ:1.00
|
O
|
E:PHE57
|
2.5
|
13.0
|
1.0
|
OE1
|
E:GLU59
|
2.5
|
12.4
|
1.0
|
OD1
|
E:ASP51
|
2.5
|
14.0
|
1.0
|
OD1
|
E:ASP53
|
2.6
|
22.3
|
1.0
|
OE1
|
E:GLU62
|
2.6
|
18.1
|
1.0
|
OE2
|
E:GLU62
|
2.7
|
18.4
|
1.0
|
OG
|
E:SER55
|
2.8
|
13.3
|
1.0
|
CD
|
E:GLU62
|
2.9
|
21.6
|
1.0
|
CD
|
E:GLU59
|
3.4
|
20.2
|
1.0
|
CG
|
E:ASP53
|
3.5
|
22.0
|
1.0
|
OE2
|
E:GLU59
|
3.6
|
14.5
|
1.0
|
CG
|
E:ASP51
|
3.6
|
14.8
|
1.0
|
C
|
E:PHE57
|
3.7
|
20.7
|
1.0
|
CB
|
E:SER55
|
3.7
|
21.0
|
1.0
|
N
|
E:SER55
|
3.9
|
15.2
|
1.0
|
OD2
|
E:ASP53
|
3.9
|
15.9
|
1.0
|
CA
|
E:ASP51
|
4.2
|
15.3
|
1.0
|
N
|
E:ASP53
|
4.2
|
17.7
|
1.0
|
N
|
E:GLU59
|
4.3
|
15.7
|
1.0
|
C
|
E:ASP51
|
4.3
|
17.9
|
1.0
|
CA
|
E:SER55
|
4.4
|
13.8
|
1.0
|
CG
|
E:GLU62
|
4.4
|
16.2
|
1.0
|
N
|
E:PHE57
|
4.4
|
12.8
|
1.0
|
N
|
E:GLN52
|
4.4
|
18.5
|
1.0
|
CA
|
E:ILE58
|
4.4
|
16.3
|
1.0
|
OD2
|
E:ASP51
|
4.4
|
17.5
|
1.0
|
O
|
E:HOH205
|
4.4
|
25.2
|
1.0
|
CB
|
E:ASP51
|
4.4
|
10.1
|
1.0
|
N
|
E:LYS54
|
4.5
|
17.4
|
1.0
|
N
|
E:ILE58
|
4.5
|
18.0
|
1.0
|
CA
|
E:PHE57
|
4.6
|
13.6
|
1.0
|
CB
|
E:ASP53
|
4.7
|
23.0
|
1.0
|
CG
|
E:GLU59
|
4.7
|
20.9
|
1.0
|
N
|
E:GLY56
|
4.8
|
15.1
|
1.0
|
C
|
E:ASP53
|
4.8
|
20.1
|
1.0
|
CA
|
E:ASP53
|
4.8
|
18.0
|
1.0
|
O
|
E:ASP51
|
4.9
|
19.5
|
1.0
|
C
|
E:ILE58
|
4.9
|
17.0
|
1.0
|
C
|
E:SER55
|
4.9
|
13.5
|
1.0
|
C
|
E:LYS54
|
5.0
|
20.3
|
1.0
|
|
Calcium binding site 10 out
of 16 in 3fs7
Go back to
Calcium Binding Sites List in 3fs7
Calcium binding site 10 out
of 16 in the Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone)
Mono view
Stereo pair view
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A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Gallus Gallus Beta-Parvalbumin (Avian Thymic Hormone) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca111
b:21.0
occ:1.00
|
OD1
|
E:ASP94
|
2.5
|
21.6
|
1.0
|
O
|
E:LYS96
|
2.6
|
14.1
|
1.0
|
OD1
|
E:ASP90
|
2.6
|
27.9
|
1.0
|
OE1
|
E:GLU101
|
2.6
|
16.9
|
1.0
|
O
|
E:HOH125
|
2.7
|
18.7
|
1.0
|
OE2
|
E:GLU101
|
2.7
|
18.5
|
1.0
|
OD1
|
E:ASP92
|
2.8
|
36.5
|
1.0
|
CD
|
E:GLU101
|
3.0
|
20.8
|
1.0
|
OD2
|
E:ASP92
|
3.2
|
40.9
|
1.0
|
CG
|
E:ASP92
|
3.2
|
32.3
|
1.0
|
CG
|
E:ASP94
|
3.4
|
24.9
|
1.0
|
C
|
E:LYS96
|
3.6
|
21.9
|
1.0
|
CG
|
E:ASP90
|
3.6
|
21.7
|
1.0
|
OD2
|
E:ASP94
|
3.8
|
22.7
|
1.0
|
O
|
E:HOH123
|
4.2
|
26.3
|
1.0
|
CA
|
E:ASP90
|
4.2
|
17.8
|
1.0
|
N
|
E:ASP94
|
4.2
|
24.1
|
1.0
|
N
|
E:ILE97
|
4.3
|
14.8
|
1.0
|
CA
|
E:ILE97
|
4.3
|
15.9
|
1.0
|
N
|
E:LYS96
|
4.3
|
15.9
|
1.0
|
CB
|
E:ASP90
|
4.4
|
19.8
|
1.0
|
OD2
|
E:ASP90
|
4.4
|
18.0
|
1.0
|
N
|
E:ASP92
|
4.4
|
17.7
|
1.0
|
CB
|
E:ASP92
|
4.4
|
31.8
|
1.0
|
CG
|
E:GLU101
|
4.5
|
15.4
|
1.0
|
CB
|
E:ASP94
|
4.5
|
22.9
|
1.0
|
CA
|
E:LYS96
|
4.5
|
16.7
|
1.0
|
N
|
E:GLY98
|
4.5
|
14.7
|
1.0
|
N
|
E:GLY93
|
4.6
|
29.1
|
1.0
|
C
|
E:ASP90
|
4.6
|
21.7
|
1.0
|
O
|
E:HOH278
|
4.7
|
35.7
|
1.0
|
N
|
E:THR91
|
4.7
|
24.6
|
1.0
|
CA
|
E:ASP92
|
4.8
|
24.0
|
1.0
|
CA
|
E:ASP94
|
4.8
|
22.2
|
1.0
|
C
|
E:ASP92
|
4.8
|
33.8
|
1.0
|
CG
|
E:LYS96
|
4.9
|
15.9
|
1.0
|
C
|
E:ILE97
|
4.9
|
16.9
|
1.0
|
N
|
E:GLY95
|
4.9
|
23.0
|
1.0
|
|
Reference:
J.P.Schuermann,
A.Tan,
J.J.Tanner,
M.T.Henzl.
Structure of Avian Thymic Hormone, A High-Affinity Avian Beta-Parvalbumin, in the CA2+-Free and CA2+-Bound States. J.Mol.Biol. V. 397 991 2010.
ISSN: ISSN 0022-2836
PubMed: 20156445
DOI: 10.1016/J.JMB.2010.02.014
Page generated: Sat Jul 13 10:16:38 2024
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